From 6cfd74d4a8d3e7526b4e00096df482acfa88c34c Mon Sep 17 00:00:00 2001
From: XimeAixa <165809705+XimeAixa@users.noreply.github.com>
Date: Tue, 14 Oct 2025 11:06:47 +0200
Subject: [PATCH 1/2] Update issue templates

---
 .../ISSUE_TEMPLATE/add-term-annotations.md    | 19 +++++++++++
 .../amend-ontology-structure.md               | 33 +++++++++++++++++++
 .../ISSUE_TEMPLATE/edit-term-annotations.md   | 22 +++++++++++++
 .github/ISSUE_TEMPLATE/new-term-request.md    | 33 +++++++++++++++++++
 4 files changed, 107 insertions(+)
 create mode 100644 .github/ISSUE_TEMPLATE/add-term-annotations.md
 create mode 100644 .github/ISSUE_TEMPLATE/amend-ontology-structure.md
 create mode 100644 .github/ISSUE_TEMPLATE/edit-term-annotations.md
 create mode 100644 .github/ISSUE_TEMPLATE/new-term-request.md

diff --git a/.github/ISSUE_TEMPLATE/add-term-annotations.md b/.github/ISSUE_TEMPLATE/add-term-annotations.md
new file mode 100644
index 0000000..278cc06
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/add-term-annotations.md
@@ -0,0 +1,19 @@
+---
+name: Add term annotations
+about: Add information to an existing term
+title: "[ADD] <ID> <label> — add <synonym/definition/xref/...>"
+labels: ''
+assignees: ''
+
+---
+
+**Term ID and label**
+(e.g., liquid-liquid phase separation (IDPO:0000025))
+
+**Information to add**
+(e.g., name, synonym, definition, definition source, cross-reference, usage note, etc.)
+
+**Evidence / references**
+Provide PMIDs/DOIs, datasets, or community discussions supporting the addition.
+
+**Additional Information**
diff --git a/.github/ISSUE_TEMPLATE/amend-ontology-structure.md b/.github/ISSUE_TEMPLATE/amend-ontology-structure.md
new file mode 100644
index 0000000..016463c
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/amend-ontology-structure.md
@@ -0,0 +1,33 @@
+---
+name: Amend ontology structure
+about: Request structural modifications (new parent, merge, split, deprecate/replace)
+title: "[REORG] <action>"
+labels: ''
+assignees: ''
+
+---
+
+**Affected Terms (ID + name)**
+(e.g., liquid-liquid phase separation (IDPO:0000025))
+
+**Requested action**
+- [ ] update hierarchy
+      - Proposed new Parent Term and ID
+      - Annotations to be modified (e.g. any definition tweaks needed to fit the new parent)
+- [ ] merge
+       - “Target” term to keep (ID + label)
+       - Which annotations to carry over (synonyms with types, xrefs, usage notes)
+- [ ] split
+      - Proposed new terms (for each: provisional label, definition, parent(s), key differentiating criterion, initial synonyms)
+      - Clear assignment rules (how existing annotations should map to each new term)
+- [ ] deprecate & replace
+      - Obsolescence reason (out of scope, inaccurate, superseded, duplicate, etc.)
+      - Replacement guidance: “replaced_by” (one best match) and/or “consider” (alternatives), with IDs.
+
+**Rationale / use case**
+Why is this change needed?
+
+**Evidence / references**
+PMIDs/DOIs or community discussions.
+
+**Additional Information**
diff --git a/.github/ISSUE_TEMPLATE/edit-term-annotations.md b/.github/ISSUE_TEMPLATE/edit-term-annotations.md
new file mode 100644
index 0000000..92e1d08
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/edit-term-annotations.md
@@ -0,0 +1,22 @@
+---
+name: Edit term annotations
+about: Modify the information of an existing term
+title: "[EDIT] <ID> <label> — change <definition/synonym/xref/...>"
+labels: ''
+assignees: ''
+
+---
+
+**Term ID and current label**
+(e.g., liquid-liquid phase separation (IDPO:0000025))
+
+**Information to modify**
+(e.g., name, synonym, definition, definition source, cross-reference, usage note, etc.)
+
+**Rationale / use case**
+Why is this modification needed?
+
+**Evidence / references**
+PMIDs/DOIs or other sources. If changing the label, indicate whether the old label should remain as an exact/related synonym.
+
+**Additional Information**
diff --git a/.github/ISSUE_TEMPLATE/new-term-request.md b/.github/ISSUE_TEMPLATE/new-term-request.md
new file mode 100644
index 0000000..5fa4194
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/new-term-request.md
@@ -0,0 +1,33 @@
+---
+name: New term request
+about: Suggest a new term for this ontology
+title: "[NTR] <preferred label>"
+labels: new term request
+assignees: ''
+
+---
+
+For new term requests, please provide the following information:
+
+**Preferred term label**
+(e.g., liquid-liquid phase separation)
+
+**Synonyms**
+(e.g., liquid–liquid demixing; note synonym types if known: exact/related/broad/narrow)
+
+**Abbreviation (if any)**
+(e.g., LLPS)
+
+**Textual definition**
+The definition should be understandable to non-specialists. Include a PubMed ID (PMID/DOI) for the source of the definition or other relevant references.
+
+**Suggested parent term**
+Please look in the hierarchy in a browser such as [OLS](http://www.ebi.ac.uk/ols/ontologies/idpo). Provide IDs (e.g., IDPO:0000123).
+
+**Rationale / use case**
+Why is this term needed? Where will it be used?
+
+**Attribution**
+If you would like a nano attribution, please indicate your ORCID id
+
+**Additional Information**

From 868070cedeb4f19d77ca03bfea6572f201f053c6 Mon Sep 17 00:00:00 2001
From: Ximeaixa <xime.aixa.5@gmail.com>
Date: Tue, 14 Oct 2025 11:12:09 +0200
Subject: [PATCH 2/2] delete odk issue template

---
 issue_template.md | 21 ---------------------
 1 file changed, 21 deletions(-)
 delete mode 100644 issue_template.md

diff --git a/issue_template.md b/issue_template.md
deleted file mode 100644
index ccbbc5a..0000000
--- a/issue_template.md
+++ /dev/null
@@ -1,21 +0,0 @@
-For new term requests, please provide the following information:
-
-## Preferred term label
-
-(e.g., Asplenia)
-
-## Synonyms
-
-(e.g., Absent spleen)
-
-## Textual definition
-
-the definition should be understandable even for non-specialists. Include a PubMed ID to refer to any relevant article that provides additional information about the suggested term.
-
-## Suggested parent term
-
-Please look in the hierarchy in a browser such as [OLS](http://www.ebi.ac.uk/ols/ontologies/idpo)
-
-## Attribution
-
-If you would like a nanoattribution, please indicate your ORCID id
\ No newline at end of file