Merge pull request #271 from CCPBioSim/270-docs-improve-getting-started-documentation

Improve Getting Started documentation clarity and workflow

Author: harryswift01

CodeEntropy/config/arg_config_manager.py

@@ -68,10 +68,12 @@
         "action": "store_true",
         "help": "Enable verbose output",
     },
-    "thread": {"type": int, "help": "How many multiprocess to use", "default": 1},
     "output_file": {
         "type": str,
-        "help": "Name of the file where the output will be written",
+        "help": (
+            "Name of the output file to write results to (filename only). Defaults "
+            "to output_file.json"
+        ),
         "default": "output_file.json",
     },
     "force_partitioning": {"type": float, "help": "Force partitioning", "default": 0.5},

docs/developer_guide.rst

@@ -98,6 +98,7 @@ Edit docs in the following directories:
 
 Contributing Code
 -----------------
+If you would to contribution to **CodeEntropy** please refer to our `Contributing Guidelines <https://github.com/CCPBioSim/CodeEntropy?tab=contributing-ov-file>`_
 
 Creating an Issue
 ^^^^^^^^^^^^^^^^^