First Commit

Author: AliSajid

.Rbuildignore

@@ -0,0 +1,4 @@
+^renv$
+^renv\.lock$
+^.*\.Rproj$
+^\.Rproj\.user$

.Rprofile

@@ -0,0 +1,5 @@
+if (file.exists("~/.Rprofile")) {
+  source("~/.Rprofile")
+}
+
+source("renv/activate.R")

.gitignore

@@ -0,0 +1,4 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

DESCRIPTION

@@ -0,0 +1,15 @@
+Package: KINNET
+Type: Package
+Title: Kinase INteraction NETwork Generation
+Version: 0.1.0.9000
+Authors@R: c(
+    person(given = c("Ali", "Sajid"),
+           family = "Imami",
+           role = c("aut", "cre"),
+           email = "Ali.Sajid.Imami@gmail.com",
+           comment = c(ORCID = "0000-0003-3684-3539")))
+Description: This package provides the functionality to process PamGene's PamChip
+    Data Output and generate kinase interaction networks from that.
+License: GPL (>= 3)
+Encoding: UTF-8
+LazyData: true

KINNET.Rproj

@@ -0,0 +1,20 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source

NAMESPACE

@@ -0,0 +1 @@
+exportPattern("^[[:alpha:]]+")

renv.lock

@@ -0,0 +1,20 @@
+{
+  "R": {
+    "Version": "4.0.3",
+    "Repositories": [
+      {
+        "Name": "CRAN",
+        "URL": "https://cran.rstudio.com"
+      }
+    ]
+  },
+  "Packages": {
+    "renv": {
+      "Package": "renv",
+      "Version": "0.12.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "7340c71f46a0fd16506cfa804e224e44"
+    }
+  }
+}

renv/.gitignore

@@ -0,0 +1,3 @@
+library/
+python/
+staging/