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Dropbox is rather weird with its download capabilities. By default the link does not work: the file you get is an HTML file. But if the end is changed to ?dl=1, then you get the right file, provided that you are on Linux (the file gets corrupt on Windows). The workaround on Windows is to change the file creation mode. Either way it's not very cross-platform.
Noting that people should try to work within the Linux VMs might be a good idea; some thought it was just for the intro lesson, and then found problems running their Windows-tested scripts in the VMs
Some issues running plotRGB, it would complain about values out of range 0:255. That requirement makes sense for actual RGB values, but is the function really not smart enough to figure out value scaling?
Differences between plot and spplot might be worth pointing out
Some students had trouble thinking with functions: what should be in a function, what should be in main.R, what are function arguments, etc.
overlay with filename argument specified makes the resulting variable forget layer names. They can be regained with names(newraster) = names(oldraster)