Merge pull request #23 from apeltzer/master

Release 0.4.4:

Author: apeltzer

.travis.yml

@@ -4,12 +4,12 @@ jdk:
 - oraclejdk8
 script: gradle build
 env:
-- version=0.4.3
+- version=0.4.4
 deploy:
   provider: releases
   api_key:
     secure: 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
-  file: build/libs/DamageProfiler-0.4.3.jar
+  file: build/libs/DamageProfiler-0.4.4.jar
   skip_cleanup: true
   on:
     all_branches: true

build.gradle

@@ -1,5 +1,5 @@
 group 'com.uni-tuebingen.de.it.eager.damageprofiler'
-version '0.4.3'
+version '0.4.4'
 
 
 

src/main/java/IO/OutputGenerator.java

@@ -3,6 +3,7 @@
 import calculations.DamageProfiler;
 import calculations.Frequencies;
 import com.google.gson.Gson;
+import com.google.gson.GsonBuilder;
 import com.itextpdf.awt.PdfGraphics2D;
 import com.itextpdf.text.*;
 import com.itextpdf.text.Font;
@@ -88,7 +89,7 @@ public void writeJSON(String version) throws IOException {
 
         json_map.put("metadata", meta_map);
 
-        Gson gson = new Gson();
+        Gson gson = new GsonBuilder().setPrettyPrinting().create();
 
         String json = gson.toJson(json_map);
 
@@ -538,7 +539,7 @@ public void computeSummaryMetrics(){
 
         summ_stats.put("mean_readlength", mean);
         summ_stats.put("std", std);
-        summ_stats.put("median", std);
+        summ_stats.put("median", median);
 
         json_map.put("summary_stats", summ_stats);
 

src/main/java/RunDamageProfiler.java

@@ -9,7 +9,7 @@
  */
 public class RunDamageProfiler {
 
-    private static final String VERSION = "0.4.3";
+    private static final String VERSION = "0.4.4";
 
 
     @SuppressWarnings("static-access")