From 856489b416f1d7d0a0583a60a0b427bc9a9283f6 Mon Sep 17 00:00:00 2001
From: Stephen Nneji <steve.nneji@gmail.com>
Date: Fri, 11 Apr 2025 15:17:28 +0100
Subject: [PATCH 1/2] Updates version to 1.0.0

---
 CITATION.cff                                  |  40 ++++++++++++++++++
 CONTRIBUTING.md                               |   1 -
 README.md                                     |   8 +++-
 .../customXY/customXYDSPCSheet.mlx            | Bin 49382 -> 49642 bytes
 utilities/plotting/plotHists.m                |   8 ++--
 version.txt                                   |   2 +-
 6 files changed, 51 insertions(+), 8 deletions(-)
 create mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 000000000..d5ad9b6e5
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,40 @@
+abstract: <p>The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB toolbox
+  for analysing non-polarized neutron reflectivity data at multiple contrasts. This
+  is designed to fit multiple contrast neutron reflectivity data, primarily using
+  the Abeles layer model but user-defined model function are also supported.</p>
+authors:
+- affiliation: Science and Technology Facilities Council
+  family-names: Hughes
+  given-names: Arwel Vaughan
+  orcid: 0009-0007-1918-8401
+- family-names: Pastula
+  given-names: Sethu Pavan Venkata Reddy
+  orcid: 0000-0001-7962-1827
+- affiliation: Science and Technology Facilities Council
+  family-names: Room
+  given-names: Alex H.
+  orcid: 0000-0002-5314-2331
+- affiliation: Science and Technology Facilities Council
+  family-names: Farooq
+  given-names: Rabiya
+  orcid: 0009-0008-1436-3933
+- affiliation: Science and Technology Facilities Council
+  family-names: Sharp
+  given-names: Paul
+  orcid: 0000-0003-3072-6155
+- affiliation: Science and Technology Facilities Council
+  family-names: Nneji
+  given-names: Stephen
+  orcid: 0000-0001-9369-1346
+cff-version: 1.2.0
+date-released: '2025-04-11'
+doi: 10.5281/zenodo.15193992
+keywords:
+- Reflectometry
+- Neutron
+license:
+- gpl-3.0-or-later
+message: If you use this software, please cite it using the metadata from this file.
+title: Reflectivity Algorithms Toolbox for RasCAL
+type: software
+version: 1.0.0
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 8603925e4..c1f8c3f3c 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -10,7 +10,6 @@ The MATLAB IDE is recommended for development, the following toolboxes are requi
 - MATLAB Coder
 - MATLAB Compiler
 - Parallel Computing Toolbox
-- Statistics and Machine Learning Toolbox (for DREAM Minimizer)
 
 After installing the IDE, proceed by creating a fork of the RAT repo, then clone the fork
 
diff --git a/README.md b/README.md
index 1f3619b15..7430654f8 100644
--- a/README.md
+++ b/README.md
@@ -1,9 +1,13 @@
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15193992.svg)](https://doi.org/10.5281/zenodo.15193992)
 [![license](https://img.shields.io/github/license/RascalSoftware/RAT.svg)](https://github.com/RascalSoftware/RAT/blob/master/LICENSE)
 [![release](https://img.shields.io/github/release/RascalSoftware/RAT.svg)](https://github.com/RascalSoftware/RAT/releases)
 [![Unit Tests](https://github.com/RascalSoftware/RAT/actions/workflows/runTests.yml/badge.svg)](https://github.com/RascalSoftware/RAT/actions/workflows/runTests.yml)
 
+
 RAT
 ===
-RAT is an acronym for Reflectivity Algorithms Toolbox for Rascal. This is a MATLAB toolbox for analysing non-polarized neutron reflectivity data at multiple contrasts. This is designed to fit multiple contrast neutron reflectivity data, primarily using the Abeles layer model but user-defined model function are also supported.
+The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB toolbox for analysing non-polarized neutron reflectivity data. The toolbox is designed to fit multiple contrast neutron reflectivity data, using the Abeles formalism with either traditional layer models, or using user-defined custom models..
 
-This is currently still in development. We are working towards a first release of the toolbox. In the meantime, please note that usage may change and that releases are not yet stable.
+How to Use
+----------
+MATLAB is required to RAT, the minimum supported version is **R2023a**. To use RAT, download and extract the appropriate version for you OS from the [release](https://github.com/RascalSoftware/RAT/releases) page. In the extracted folder, run the `addPaths` script in the MATLAB console and you can now run your analysis.
diff --git a/examples/normalReflectivity/customXY/customXYDSPCSheet.mlx b/examples/normalReflectivity/customXY/customXYDSPCSheet.mlx
index 796c5daf6788da7d0434142ab3c2bdcb02b18181..5e58deda2bab296e27cb956e21aa00ae94379dbf 100644
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diff --git a/utilities/plotting/plotHists.m b/utilities/plotting/plotHists.m
index fe77e0acf..4bc64eee9 100644
--- a/utilities/plotting/plotHists.m
+++ b/utilities/plotting/plotHists.m
@@ -1,4 +1,4 @@
-function h = plotHists(result, options)   
+function plotHists(result, options)   
     % Plots the Bayes histogram plot from the chain, with or without smoothing.
     % If selected, smoothing is via a moving average algorithm.
     %
@@ -28,7 +28,7 @@
     smooth = options.smooth;
 
     if ~isempty(options.figure)
-      h = figure(options.figure);
+        h = figure(options.figure);
     else
         h = figure();
     end
@@ -53,9 +53,9 @@
             N = smoothdata(N, 'movmean');
         end
     
-        bar(edges2,N,1,'w')
+        bar(edges2,N,1,'w');
     
         set(h,'ytick',[]);
-        title(sprintf('%s',fitNames{i}))
+        title(sprintf('%s',fitNames{i}));
     end
 end
diff --git a/version.txt b/version.txt
index 537aabf7f..afaf360d3 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-1.0.0-beta
\ No newline at end of file
+1.0.0
\ No newline at end of file

From 5e7f819a76854f34f90a0f4a8da9366550b0c52f Mon Sep 17 00:00:00 2001
From: Stephen Nneji <steve.nneji@gmail.com>
Date: Fri, 11 Apr 2025 16:05:30 +0100
Subject: [PATCH 2/2] Addresses review comment

---
 CITATION.cff | 8 ++++----
 README.md    | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index d5ad9b6e5..58f62d26d 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,7 +1,7 @@
-abstract: <p>The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB toolbox
-  for analysing non-polarized neutron reflectivity data at multiple contrasts. This
-  is designed to fit multiple contrast neutron reflectivity data, primarily using
-  the Abeles layer model but user-defined model function are also supported.</p>
+abstract: <p><span>The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB
+  toolbox for analysing non-polarized neutron reflectivity data. The toolbox is designed
+  to fit multiple contrast neutron reflectivity data, using the Abeles formalism with
+  either traditional layer models, or using user-defined custom models.</span></p>
 authors:
 - affiliation: Science and Technology Facilities Council
   family-names: Hughes
diff --git a/README.md b/README.md
index 7430654f8..c77b0008b 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
 
 RAT
 ===
-The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB toolbox for analysing non-polarized neutron reflectivity data. The toolbox is designed to fit multiple contrast neutron reflectivity data, using the Abeles formalism with either traditional layer models, or using user-defined custom models..
+The Reflectivity Algorithms Toolbox (RAT) for Rascal is a MATLAB toolbox for analysing non-polarized neutron reflectivity data. The toolbox is designed to fit multiple contrast neutron reflectivity data, using the Abeles formalism with either traditional layer models, or using user-defined custom models.
 
 How to Use
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