Force DeconRNASeq installation when it cannot be installed due to versions problems

mhurtado13 · mhurtado13 · commit 2cecfa84b916 · 2025-11-05T22:37:23.000+01:00
diff --git a/R/zzz.R b/R/zzz.R
@@ -4,4 +4,8 @@
 
   dir.create(results_dir, showWarnings = FALSE, recursive = TRUE)
   dir.create(signature_dir, showWarnings = FALSE, recursive = TRUE)
+
+  if (!requireNamespace("DeconRNASeq", quietly = TRUE)) {
+    BiocManager::install("DeconRNASeq", force = TRUE)
+  }
 }

Original file line number	Diff line number	Diff line change
`@@ -4,4 +4,8 @@`
`4`	`4`
`5`	`5`	`dir.create(results_dir, showWarnings = FALSE, recursive = TRUE)`
`6`	`6`	`dir.create(signature_dir, showWarnings = FALSE, recursive = TRUE)`
	`7`	`+`
	`8`	`+ if (!requireNamespace("DeconRNASeq", quietly = TRUE)) {`
	`9`	`+ BiocManager::install("DeconRNASeq", force = TRUE)`
	`10`	`+ }`
`7`	`11`	`}`