Merge pull request #138 from afeld/upgrade-packages

upgrade packages

Author: afeld

extras/docs/environment.yml

@@ -5,4 +5,4 @@ channels:
   - defaults
 dependencies:
   # this needs to stay in sync with ../environment.yml
-  - jupyter-book=0.15.1
+  - jupyter-book=1.0.2

extras/environment.lock.yml

@@ -4,230 +4,241 @@ channels:
   - defaults
   - conda-forge
 dependencies:
-  - accessible-pygments=0.0.4=pyhd8ed1ab_0
+  - accessible-pygments=0.0.5=pyhd8ed1ab_0
   - alabaster=0.7.16=pyhd8ed1ab_0
-  - anyio=4.3.0=pyhd8ed1ab_0
+  - anyio=4.5.0=pyhd8ed1ab_0
   - appnope=0.1.4=pyhd8ed1ab_0
   - argon2-cffi=23.1.0=pyhd8ed1ab_0
-  - argon2-cffi-bindings=21.2.0=py310h2aa6e3c_4
+  - argon2-cffi-bindings=21.2.0=py310h493c2e1_5
   - arrow=1.3.0=pyhd8ed1ab_0
   - asttokens=2.4.1=pyhd8ed1ab_0
   - async-lru=2.0.4=pyhd8ed1ab_0
-  - attrs=23.2.0=pyh71513ae_0
-  - autopep8=2.0.4=pyhd8ed1ab_0
+  - attrs=24.2.0=pyh71513ae_0
+  - autopep8=2.3.1=pyhd8ed1ab_0
   - babel=2.14.0=pyhd8ed1ab_0
   - beautifulsoup4=4.12.3=pyha770c72_0
-  - black=24.2.0=py310hbe9552e_0
+  - black=24.8.0=py310hbe9552e_1
   - bleach=6.1.0=pyhd8ed1ab_0
-  - brotli-python=1.1.0=py310h1253130_1
-  - bzip2=1.0.8=h93a5062_5
-  - ca-certificates=2024.2.2=hf0a4a13_0
+  - brotli-python=1.1.0=py310hb4ad77e_2
+  - bzip2=1.0.8=h99b78c6_7
+  - ca-certificates=2024.8.30=hf0a4a13_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - certifi=2024.2.2=pyhd8ed1ab_0
-  - cffi=1.16.0=py310hdcd7c05_0
+  - certifi=2024.8.30=pyhd8ed1ab_0
+  - cffi=1.17.1=py310h497396d_0
   - charset-normalizer=3.3.2=pyhd8ed1ab_0
   - click=8.1.7=unix_pyh707e725_0
   - colorama=0.4.6=pyhd8ed1ab_0
   - comm=0.2.2=pyhd8ed1ab_0
-  - dataclasses=0.8=pyhc8e2a94_3
-  - debugpy=1.8.1=py310h692a8b6_0
+  - debugpy=1.8.5=py310hb4ad77e_1
   - decorator=5.1.1=pyhd8ed1ab_0
   - defusedxml=0.7.1=pyhd8ed1ab_0
-  - docutils=0.18.1=py310hbe9552e_1
+  - docutils=0.20.1=py310hbe9552e_3
   - entrypoints=0.4=pyhd8ed1ab_0
-  - exceptiongroup=1.2.0=pyhd8ed1ab_2
-  - executing=2.0.1=pyhd8ed1ab_0
+  - exceptiongroup=1.2.2=pyhd8ed1ab_0
+  - executing=2.1.0=pyhd8ed1ab_0
   - fqdn=1.5.1=pyhd8ed1ab_0
-  - gettext=0.21.1=h0186832_0
+  - gettext=0.22.5=h8414b35_3
+  - gettext-tools=0.22.5=h8414b35_3
   - gitdb=4.0.11=pyhd8ed1ab_0
-  - gitpython=3.1.42=pyhd8ed1ab_0
-  - greenlet=3.0.3=py310h692a8b6_0
+  - gitpython=3.1.43=pyhd8ed1ab_0
+  - greenlet=3.1.0=py310hb4ad77e_2
   - h11=0.14.0=pyhd8ed1ab_0
   - h2=4.1.0=pyhd8ed1ab_0
   - hpack=4.0.0=pyh9f0ad1d_0
   - html5lib=1.1=pyh9f0ad1d_0
-  - httpcore=1.0.4=pyhd8ed1ab_0
-  - httpx=0.27.0=pyhd8ed1ab_0
+  - httpcore=1.0.5=pyhd8ed1ab_0
+  - httpx=0.27.2=pyhd8ed1ab_0
   - hyperframe=6.0.1=pyhd8ed1ab_0
-  - icu=73.2=hc8870d7_0
-  - idna=3.6=pyhd8ed1ab_0
+  - icu=75.1=hfee45f7_0
+  - idna=3.10=pyhd8ed1ab_0
   - imagesize=1.4.1=pyhd8ed1ab_0
-  - importlib-metadata=7.0.2=pyha770c72_0
-  - importlib_metadata=7.0.2=hd8ed1ab_0
-  - importlib_resources=6.3.0=pyhd8ed1ab_0
+  - importlib-metadata=8.5.0=pyha770c72_0
+  - importlib_metadata=8.5.0=hd8ed1ab_0
+  - importlib_resources=6.4.5=pyhd8ed1ab_0
   - iniconfig=2.0.0=pyhd8ed1ab_0
-  - ipykernel=6.29.3=pyh3cd1d5f_0
-  - ipytest=0.13.3=pyhd8ed1ab_0
-  - ipython=8.22.2=pyh707e725_0
-  - ipywidgets=8.1.2=pyhd8ed1ab_0
+  - ipykernel=6.29.5=pyh57ce528_0
+  - ipytest=0.14.2=pyhd8ed1ab_0
+  - ipython=8.27.0=pyh707e725_0
+  - ipywidgets=8.1.5=pyhd8ed1ab_0
   - isoduration=20.11.0=pyhd8ed1ab_0
   - jedi=0.19.1=pyhd8ed1ab_0
-  - jinja2=3.1.3=pyhd8ed1ab_0
-  - json5=0.9.23=pyhd8ed1ab_0
-  - jsonpointer=2.4=py310hbe9552e_3
-  - jsonschema=4.21.1=pyhd8ed1ab_0
+  - jinja2=3.1.4=pyhd8ed1ab_0
+  - json5=0.9.25=pyhd8ed1ab_0
+  - jsonpointer=3.0.0=py310hbe9552e_1
+  - jsonschema=4.23.0=pyhd8ed1ab_0
   - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
-  - jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
-  - jupyter-book=0.15.1=pyhd8ed1ab_0
-  - jupyter-cache=0.6.1=pyhd8ed1ab_0
-  - jupyter-lsp=2.2.4=pyhd8ed1ab_0
-  - jupyter-resource-usage=1.0.2=pyhd8ed1ab_0
+  - jsonschema-with-format-nongpl=4.23.0=hd8ed1ab_0
+  - jupyter-book=1.0.2=pyhd8ed1ab_0
+  - jupyter-cache=1.0.0=pyhd8ed1ab_0
+  - jupyter-lsp=2.2.5=pyhd8ed1ab_0
+  - jupyter-resource-usage=1.1.0=pyhd8ed1ab_0
   - jupyter-server-mathjax=0.2.6=pyh5bfe37b_1
-  - jupyter_client=8.6.1=pyhd8ed1ab_0
+  - jupyter_client=8.6.3=pyhd8ed1ab_0
   - jupyter_core=5.7.2=py310hbe9552e_0
-  - jupyter_events=0.9.1=pyhd8ed1ab_0
-  - jupyter_server=2.13.0=pyhd8ed1ab_0
+  - jupyter_events=0.10.0=pyhd8ed1ab_0
+  - jupyter_server=2.14.2=pyhd8ed1ab_0
   - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
-  - jupyterlab=4.1.5=pyhd8ed1ab_0
+  - jupyterlab=4.2.5=pyhd8ed1ab_0
   - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
   - jupyterlab_rise=0.42.0=pyhd8ed1ab_0
-  - jupyterlab_server=2.25.4=pyhd8ed1ab_0
-  - jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
+  - jupyterlab_server=2.27.3=pyhd8ed1ab_0
+  - jupyterlab_widgets=3.0.13=pyhd8ed1ab_0
   - kaleido-core=0.2.1=h27ca646_0
+  - krb5=1.21.3=h237132a_0
   - latexcodec=2.0.1=pyh9f0ad1d_0
-  - libblas=3.9.0=21_osxarm64_openblas
-  - libcblas=3.9.0=21_osxarm64_openblas
-  - libcxx=16.0.6=h4653b0c_0
+  - libasprintf=0.22.5=h8414b35_3
+  - libasprintf-devel=0.22.5=h8414b35_3
+  - libblas=3.9.0=24_osxarm64_openblas
+  - libcblas=3.9.0=24_osxarm64_openblas
+  - libcxx=19.1.0=ha82da77_0
+  - libedit=3.1.20191231=hc8eb9b7_2
   - libffi=3.4.2=h3422bc3_5
+  - libgettextpo=0.22.5=h8414b35_3
+  - libgettextpo-devel=0.22.5=h8414b35_3
   - libgfortran=5.0.0=13_2_0_hd922786_3
   - libgfortran5=13.2.0=hf226fd6_3
   - libiconv=1.17=h0d3ecfb_2
   - libidn2=2.3.7=h93a5062_0
-  - liblapack=3.9.0=21_osxarm64_openblas
-  - libopenblas=0.3.26=openmp_h6c19121_0
-  - libsodium=1.0.18=h27ca646_1
-  - libsqlite=3.45.2=h091b4b1_0
+  - libintl=0.22.5=h8414b35_3
+  - libintl-devel=0.22.5=h8414b35_3
+  - liblapack=3.9.0=24_osxarm64_openblas
+  - libopenblas=0.3.27=openmp_h517c56d_1
+  - libsodium=1.0.20=h99b78c6_0
+  - libsqlite=3.46.1=hc14010f_0
   - libunistring=0.9.10=h3422bc3_0
-  - libxml2=2.12.5=h0d0cfa8_0
+  - libxml2=2.12.7=h01dff8b_4
   - libxslt=1.1.39=h223e5b9_0
-  - libzlib=1.2.13=h53f4e23_5
+  - libzlib=1.3.1=hfb2fe0b_1
   - linkify-it-py=2.0.3=pyhd8ed1ab_0
-  - llvm-openmp=18.1.1=hcd81f8e_0
-  - lxml=5.1.0=py310hd9ecdb4_0
-  - markdown-it-py=2.2.0=pyhd8ed1ab_0
-  - markupsafe=2.1.5=py310hd125d64_0
+  - llvm-openmp=18.1.8=hde57baf_1
+  - lxml=5.3.0=py310hed7ee58_1
+  - markdown-it-py=3.0.0=pyhd8ed1ab_0
+  - markupsafe=2.1.5=py310h493c2e1_1
   - mathjax=2.7.7=hce30654_3
-  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
-  - mdit-py-plugins=0.4.0=pyhd8ed1ab_0
+  - matplotlib-inline=0.1.7=pyhd8ed1ab_0
+  - mdit-py-plugins=0.4.2=pyhd8ed1ab_0
   - mdurl=0.1.2=pyhd8ed1ab_0
   - mistune=3.0.2=pyhd8ed1ab_0
   - mypy_extensions=1.0.0=pyha770c72_0
-  - myst-nb=0.17.2=pyhd8ed1ab_0
-  - myst-parser=0.18.1=pyhd8ed1ab_0
-  - nb_conda_kernels=2.3.1=pyh707e725_4
-  - nbclient=0.7.4=pyhd8ed1ab_0
-  - nbconvert=7.16.2=pyhd8ed1ab_0
-  - nbconvert-core=7.16.2=pyhd8ed1ab_0
-  - nbconvert-pandoc=7.16.2=pyhd8ed1ab_0
-  - nbdime=4.0.1=pyhd8ed1ab_0
-  - nbformat=5.10.3=pyhd8ed1ab_0
-  - nbqa=1.8.4=pyhd8ed1ab_0
-  - ncurses=6.4=h463b476_2
+  - myst-nb=1.1.1=pyhd8ed1ab_0
+  - myst-parser=2.0.0=pyhd8ed1ab_0
+  - nb_conda_kernels=2.5.1=pyh707e725_2
+  - nbclient=0.10.0=pyhd8ed1ab_0
+  - nbconvert=7.16.4=hd8ed1ab_1
+  - nbconvert-core=7.16.4=pyhd8ed1ab_1
+  - nbconvert-pandoc=7.16.4=hd8ed1ab_1
+  - nbdime=4.0.2=pyhd8ed1ab_0
+  - nbformat=5.10.4=pyhd8ed1ab_0
+  - nbqa=1.9.0=pyhd8ed1ab_0
+  - ncurses=6.5=h7bae524_1
   - nest-asyncio=1.6.0=pyhd8ed1ab_0
-  - notebook=7.1.2=pyhd8ed1ab_0
+  - notebook=7.2.2=pyhd8ed1ab_0
   - notebook-shim=0.2.4=pyhd8ed1ab_0
   - numpy=1.26.4=py310hd45542a_0
-  - openssl=3.2.1=h0d3ecfb_0
+  - openssl=3.3.2=h8359307_0
   - overrides=7.7.0=pyhd8ed1ab_0
-  - packaging=24.0=pyhd8ed1ab_0
-  - pandas=1.5.3=py310h2b830bf_1
-  - pandoc=3.1.12.2=hce30654_0
+  - packaging=24.1=pyhd8ed1ab_0
+  - pandas=2.1.4=py310h6e3cc31_0
+  - pandoc=3.4=hce30654_0
   - pandocfilters=1.5.0=pyhd8ed1ab_0
-  - parso=0.8.3=pyhd8ed1ab_0
+  - parso=0.8.4=pyhd8ed1ab_0
   - pathspec=0.12.1=pyhd8ed1ab_0
   - patsy=0.5.6=pyhd8ed1ab_0
   - pexpect=4.9.0=pyhd8ed1ab_0
   - pickleshare=0.7.5=py_1003
-  - pip=24.0=pyhd8ed1ab_0
+  - pip=24.2=pyh8b19718_1
   - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
-  - platformdirs=4.2.0=pyhd8ed1ab_0
-  - plotly=5.15.0=pyhd8ed1ab_0
-  - pluggy=1.4.0=pyhd8ed1ab_0
+  - platformdirs=4.3.6=pyhd8ed1ab_0
+  - plotly=5.24.1=pyhd8ed1ab_0
+  - pluggy=1.5.0=pyhd8ed1ab_0
   - prometheus_client=0.20.0=pyhd8ed1ab_0
-  - prompt-toolkit=3.0.42=pyha770c72_0
+  - prompt-toolkit=3.0.47=pyha770c72_0
   - psutil=5.9.8=py310hd125d64_0
   - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pure_eval=0.2.2=pyhd8ed1ab_0
+  - pure_eval=0.2.3=pyhd8ed1ab_0
   - pybtex=0.24.0=pyhd8ed1ab_2
-  - pybtex-docutils=1.0.3=py310hbe9552e_1
-  - pycodestyle=2.11.1=pyhd8ed1ab_0
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pydata-sphinx-theme=0.15.2=pyhd8ed1ab_0
-  - pygments=2.17.2=pyhd8ed1ab_0
-  - pyobjc-core=10.2=py310hb3aa912_0
-  - pyobjc-framework-cocoa=10.2=py310hb3aa912_0
+  - pybtex-docutils=1.0.3=py310hbe9552e_2
+  - pycodestyle=2.12.1=pyhd8ed1ab_0
+  - pycparser=2.22=pyhd8ed1ab_0
+  - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
+  - pygments=2.18.0=pyhd8ed1ab_0
+  - pyobjc-core=10.3.1=py310hb3dec1a_1
+  - pyobjc-framework-cocoa=10.3.1=py310hb3dec1a_1
   - pysocks=1.7.1=pyha2e5f31_6
-  - pytest=8.1.1=pyhd8ed1ab_0
+  - pytest=8.3.3=pyhd8ed1ab_0
   - python=3.10.12=h01493a6_0_cpython
   - python-dateutil=2.9.0=pyhd8ed1ab_0
-  - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
+  - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
   - python-json-logger=2.0.7=pyhd8ed1ab_0
   - python-kaleido=0.2.1=pyhd8ed1ab_0
-  - python_abi=3.10=4_cp310
-  - pytz=2024.1=pyhd8ed1ab_0
-  - pyyaml=6.0.1=py310h2aa6e3c_1
-  - pyzmq=25.1.2=py310hbb13138_0
+  - python-tzdata=2024.1=pyhd8ed1ab_0
+  - python_abi=3.10=5_cp310
+  - pytz=2024.2=pyhd8ed1ab_0
+  - pyyaml=6.0.2=py310h493c2e1_1
+  - pyzmq=26.2.0=py310hcab215c_2
   - readline=8.2=h92ec313_1
-  - referencing=0.33.0=pyhd8ed1ab_0
-  - requests=2.31.0=pyhd8ed1ab_0
+  - referencing=0.35.1=pyhd8ed1ab_0
+  - requests=2.32.3=pyhd8ed1ab_0
   - rfc3339-validator=0.1.4=pyhd8ed1ab_0
   - rfc3986-validator=0.1.1=pyh9f0ad1d_0
-  - rpds-py=0.18.0=py310hf632f72_0
-  - scipy=1.12.0=py310hf4b343e_2
-  - send2trash=1.8.2=pyhd1c38e8_0
-  - setuptools=69.2.0=pyhd8ed1ab_0
+  - rpds-py=0.20.0=py310h7a930dc_1
+  - scipy=1.14.1=py310h35b72dc_0
+  - send2trash=1.8.3=pyh31c8845_0
+  - setuptools=74.1.2=pyhd8ed1ab_0
   - six=1.16.0=pyh6c4a22f_0
   - smmap=5.0.0=pyhd8ed1ab_0
   - sniffio=1.3.1=pyhd8ed1ab_0
   - snowballstemmer=2.2.0=pyhd8ed1ab_0
   - soupsieve=2.5=pyhd8ed1ab_1
-  - sphinx=5.0.2=pyh6c4a22f_0
-  - sphinx-book-theme=1.0.1=pyhd8ed1ab_0
+  - sphinx=7.4.7=pyhd8ed1ab_0
+  - sphinx-book-theme=1.1.3=pyhd8ed1ab_0
   - sphinx-comments=0.0.3=pyh9f0ad1d_0
   - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
-  - sphinx-design=0.3.0=pyhd8ed1ab_0
-  - sphinx-external-toc=0.3.1=pyhd8ed1ab_1
-  - sphinx-jupyterbook-latex=0.5.2=pyhd8ed1ab_0
+  - sphinx-design=0.6.1=pyhd8ed1ab_1
+  - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
+  - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
   - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
-  - sphinx-thebe=0.2.1=pyhd8ed1ab_0
+  - sphinx-thebe=0.3.1=pyhd8ed1ab_0
   - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
-  - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0
-  - sphinxcontrib-bibtex=2.5.0=pyhd8ed1ab_0
-  - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0
-  - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0
+  - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0
+  - sphinxcontrib-bibtex=2.6.3=pyhd8ed1ab_0
+  - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0
+  - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0
   - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
-  - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0
+  - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0
   - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
-  - sqlalchemy=2.0.28=py310hd125d64_0
+  - sqlalchemy=2.0.35=py310h493c2e1_0
   - stack_data=0.6.2=pyhd8ed1ab_0
-  - statsmodels=0.14.1=py310h50ce23c_0
+  - statsmodels=0.14.3=py310hae04be4_0
   - tabulate=0.9.0=pyhd8ed1ab_1
-  - tenacity=8.2.3=pyhd8ed1ab_0
+  - tenacity=9.0.0=pyhd8ed1ab_0
   - terminado=0.18.1=pyh31c8845_0
-  - tinycss2=1.2.1=pyhd8ed1ab_0
+  - tinycss2=1.3.0=pyhd8ed1ab_0
   - tk=8.6.13=h5083fa2_1
-  - tokenize-rt=5.2.0=pyhd8ed1ab_1
+  - tokenize-rt=6.0.0=pyhd8ed1ab_0
   - tomli=2.0.1=pyhd8ed1ab_0
-  - tornado=6.4=py310hd125d64_0
-  - traitlets=5.14.2=pyhd8ed1ab_0
-  - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
-  - typing-extensions=4.10.0=hd8ed1ab_0
-  - typing_extensions=4.10.0=pyha770c72_0
+  - tornado=6.4.1=py310h493c2e1_1
+  - traitlets=5.14.3=pyhd8ed1ab_0
+  - types-python-dateutil=2.9.0.20240906=pyhd8ed1ab_0
+  - typing-extensions=4.12.2=hd8ed1ab_0
+  - typing_extensions=4.12.2=pyha770c72_0
   - typing_utils=0.1.0=pyhd8ed1ab_0
-  - tzdata=2024a=h0c530f3_0
+  - tzdata=2024a=h8827d51_1
   - uc-micro-py=1.0.3=pyhd8ed1ab_0
   - uri-template=1.3.0=pyhd8ed1ab_0
-  - urllib3=2.2.1=pyhd8ed1ab_0
+  - urllib3=2.2.3=pyhd8ed1ab_0
   - wcwidth=0.2.13=pyhd8ed1ab_0
-  - webcolors=1.13=pyhd8ed1ab_0
+  - webcolors=24.8.0=pyhd8ed1ab_0
   - webencodings=0.5.1=pyhd8ed1ab_2
-  - websocket-client=1.7.0=pyhd8ed1ab_0
-  - wget=1.20.3=h470526e_1
-  - wheel=0.42.0=pyhd8ed1ab_0
-  - widgetsnbextension=4.0.10=pyhd8ed1ab_0
+  - websocket-client=1.8.0=pyhd8ed1ab_0
+  - wget=1.21.4=he2df1f1_0
+  - wheel=0.44.0=pyhd8ed1ab_0
+  - widgetsnbextension=4.0.13=pyhd8ed1ab_0
   - xz=5.2.6=h57fd34a_0
   - yaml=0.2.5=h3422bc3_2
-  - zeromq=4.3.5=hebf3989_1
-  - zipp=3.17.0=pyhd8ed1ab_0
-  - zlib=1.2.13=h53f4e23_5
+  - zeromq=4.3.5=h64debc3_5
+  - zipp=3.20.2=pyhd8ed1ab_0
+  - zlib=1.3.1=hfb2fe0b_1
+  - zstandard=0.23.0=py310h2665a74_1
+  - zstd=1.5.6=hb46c0d2_0