From b10de5102d3b10080485ec5673c6387e92ea73bc Mon Sep 17 00:00:00 2001 From: cdeust Date: Sun, 31 May 2026 11:29:09 +0200 Subject: [PATCH 01/38] fix(clinical-rebuild): resolve all 5 blockers from genius review before running workflow MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Pre-flight fixes so clinical-graph-rebuild.js runs clean: B1 (L6 key): workflow now enumerates dynamic L6: keys from /api/graph/progress.phases — never hardcodes "L6". B2 (CXGB missing decoder): workflow drops /api/graph.bin fast-path; cold-start uses SSE + /api/graph/phase instead. B3 (/clinical/ 403): added serve_clinical() + /clinical/ route in _route_unified_get; _clinical_root/_clinical_html_path on Handler class. B4 (Sigma duplicate addNode): workflow now specifies loadedPhases + pendingPhases Sets dedup pattern in constraints. B5 (stash conflict): resolved — server files take server-pipeline version. Also: node_total + edge_total added to get_phase_payload() response so the workflow's phase-size guards work. Sigma v3 + graphology v0.25.4 vendored offline at ui/clinical/vendor/. Workflow PR target corrected to viz/server-streaming-pipeline. W2 SSE source.close() added to constraints. Co-Authored-By: Claude Sonnet 4.6 --- .claude/workflows/clinical-graph-rebuild.js | 580 +++++++ .mcp.json | 2 +- mcp_server/server/http_standalone.py | 99 +- .../server/http_standalone_endpoints.py | 227 +-- mcp_server/server/http_standalone_graph.py | 8 +- ui/clinical/vendor/graphology.umd.min.js | 2 + ui/clinical/vendor/sigma.min.js | 1351 +++++++++++++++++ ui/unified-viz.html | 43 +- ui/unified/js/chain_panel.js | 193 +++ ui/unified/js/knowledge.js | 91 +- ui/unified/js/polling.js | 192 +-- ui/unified/js/timeline.js | 3 + ui/unified/js/wiki.js | 13 - ui/unified/js/workflow_graph.js | 1045 +++++-------- uv.lock | 207 ++- 15 files changed, 2904 insertions(+), 1152 deletions(-) create mode 100644 .claude/workflows/clinical-graph-rebuild.js create mode 100644 ui/clinical/vendor/graphology.umd.min.js create mode 100644 ui/clinical/vendor/sigma.min.js create mode 100644 ui/unified/js/chain_panel.js diff --git a/.claude/workflows/clinical-graph-rebuild.js b/.claude/workflows/clinical-graph-rebuild.js new file mode 100644 index 00000000..cc8344cf --- /dev/null +++ b/.claude/workflows/clinical-graph-rebuild.js @@ -0,0 +1,580 @@ +// Clinical-hospital graph viz rebuild — full implementation workflow. +// +// Purpose +// ------- +// Build a fresh visualization UI at ui/clinical/ that follows the +// "clinical hospital" navigation model: +// 1. Open at BIG PICTURE — domains + structural hubs only. +// 2. ZOOM IN one cut at a time (scroll/pinch) to load the next phase +// (L0 → L1 → L2 → L3 → L4 → L5 → L6). +// 3. CLICK A NODE → opens that node's chain-of-call / chain-of-action +// as a SEPARATE graph view, never polluting the main view. +// 4. Zero JS errors permitted (verify phase enforces). +// +// Foundation +// ---------- +// * Sigma.js + graphology (WebGL renderer, scales to 100 k+ nodes). +// * Vendored offline at ui/clinical/vendor/. +// * Apache Arrow JS for /api/quadtree position decode. +// +// Server contract this depends on +// ------------------------------- +// All endpoints already on origin/main (see PR #50): +// GET /api/graph/progress phase state + readiness +// GET /api/graph/phase?name=L0..L6... per-phase {nodes, edges} +// GET /api/graph cumulative JSON cache +// GET /api/graph.bin CXGB binary snapshot +// GET /api/quadtree Apache Arrow IPC (id, x, y, kind) +// GET /api/graph/events SSE batches during build +// +// Where to run +// ------------ +// From the repo root, on a machine with the dev server reachable: +// Workflow({ scriptPath: '.claude/workflows/clinical-graph-rebuild.js' }) +// +// The branch viz/ui-clinical-rebuild is pre-created and pushed; this +// workflow's Commit phase will commit + push + open a PR against main. + +export const meta = { + name: 'clinical-graph-rebuild', + description: 'Build the clinical-hospital graph viz at ui/clinical/ — Sigma.js + graphology, big-picture→zoom-in→sub-graph, zero JS errors', + phases: [ + { title: 'Spec', detail: '3 parallel design agents — navigation model, sub-graph drill-down, streaming wire-up' }, + { title: 'Scaffold', detail: 'create ui/clinical/, vendor sigma.js + graphology, write boot HTML + module skeleton' }, + { title: 'Big-pic', detail: 'implement the landing big-picture view (domains + structural backbone) from /api/graph/phase' }, + { title: 'Zoom', detail: 'progressive zoom-in: scroll/pinch deepens the visible phase (L0→L1→L2→L3)' }, + { title: 'Sub-graph', detail: 'node click opens chain-of-call/action as a SEPARATE graph view (modal/side panel)' }, + { title: 'Live', detail: 'wire /api/graph/events SSE for incremental updates after initial paint' }, + { title: 'Verify', detail: '4 parallel adversarial verifiers — JS syntax, console.error hunt, accessibility, smoke test' }, + { title: 'Commit', detail: 'final review pass + git commit + push + open PR' }, + ], +} + +const SPEC_SCHEMA = { + type: 'object', + properties: { + title: { type: 'string' }, + decisions: { + type: 'array', + items: { type: 'object', properties: { + decision: { type: 'string' }, + rationale: { type: 'string' }, + }, required: ['decision', 'rationale'] } + }, + api_endpoints_used: { type: 'array', items: { type: 'string' } }, + pseudocode: { type: 'string' }, + }, + required: ['title', 'decisions', 'api_endpoints_used', 'pseudocode'], + additionalProperties: false, +} + +const IMPL_SCHEMA = { + type: 'object', + properties: { + files_written: { type: 'array', items: { type: 'string' } }, + files_modified: { type: 'array', items: { type: 'string' } }, + summary: { type: 'string' }, + open_questions: { type: 'array', items: { type: 'string' } }, + }, + required: ['files_written', 'files_modified', 'summary'], + additionalProperties: false, +} + +const VERIFY_SCHEMA = { + type: 'object', + properties: { + check: { type: 'string' }, + passed: { type: 'boolean' }, + findings: { + type: 'array', + items: { type: 'object', properties: { + severity: { type: 'string', enum: ['blocker', 'warning', 'info'] }, + file: { type: 'string' }, + line: { type: 'number' }, + message: { type: 'string' }, + }, required: ['severity', 'message'] } + }, + }, + required: ['check', 'passed', 'findings'], + additionalProperties: false, +} + +// ── Shared context every agent gets ── +const CTX = ` +PROJECT: Cortex — neural graph visualization rebuild. +BRANCH: viz/ui-clinical-rebuild (already created, ready for commits) +TARGET: ui/clinical/ ← NEW directory, do not touch ui/unified/* or ui/dashboard/* + +DESIGN PRINCIPLE — "Clinical hospital" navigation: + 1. Open at BIG PICTURE — domains + structural hubs only (~50–500 nodes). + Like seeing the hospital from the entrance: corridors, wings, + departments. NOT every patient room at once. + 2. ZOOM IN (scroll / pinch) progresses one layer deeper. + L0 domains → L1 setup (skills/hooks/agents/commands) → L2 tools → + L3 files → L4 discussions → L5 memories → L6 symbols. + User-controlled. Each zoom level loads the next /api/graph/phase + batch and fades it in around the existing nodes. + 3. CLICK A NODE → opens that node's CHAIN-OF-CALL / CHAIN-OF-ACTION + as a SEPARATE graph view (modal, side panel, or routed page). + Does NOT pollute the main big-picture view. + 4. ZERO JavaScript errors permitted — every console.error or + uncaught throw blocks the verify phase. + +RENDERER: Sigma.js + graphology (WebGL). + Vendored offline at ui/clinical/vendor/sigma.min.js + graphology.umd.min.js + (the scaffold step downloads them). + +SERVER CONTRACT (already on the branch, no changes needed): + GET /api/graph/progress → {phase, pct, phases{key→bool}, full_ready, message, elapsed, …} + GET /api/graph/phase?name= → {nodes:[], edges:[], ready:bool, node_total:int, edge_total:int, phase:str, deps:[]} + GET /api/graph → cumulative cached snapshot (JSON) + GET /api/quadtree → Apache Arrow IPC (id, x, y, kind) — returns 503 {reason:"no_layout"} until recompute_layout has run; handle this gracefully + GET /api/graph/events → SSE batches (event:batch data:{label,nodes,edges,off,n_total,e_total}; event:done data:{total_nodes,total_edges}) + GET /api/recompute_layout → triggers DrL layout computation; call once during scaffold setup + +IMPORTANT — phase key naming: + L0..L5 are fixed keys. L6 phases are DYNAMIC: key format is "L6:" (e.g. "L6:cortex"). + NEVER hardcode "L6" as a phase key. Instead enumerate dynamic keys from /api/graph/progress .phases dict. + Example: Object.keys(progress.phases).filter(k => k.startsWith('L6:')) gives all L6 sub-phases. + +IMPORTANT — cold-start sequence: + Use SSE (/api/graph/events) as the primary data channel. Do NOT use /api/graph.bin + (CXGB binary decoder is not bundled). Cold-start = fetch L0+L1 via /api/graph/phase, + then subscribe to SSE for remaining phases. + +IMPORTANT — /api/quadtree positions: + Positions come from DrL layout (not ForceAtlas2). On fresh server start the quadtree + may return 503 {reason:"no_layout"}. Handle this: fall back to graphology's built-in + circular layout for initial render, then update positions when quadtree becomes available. + +CONSTRAINTS: + * Do not touch ui/unified/*, ui/dashboard/*, ui/methodology/* — they stay. + * No console.log spam in shipping code (warn/error/info only on real events). + * No JS syntax errors (node --check must pass on every file). + * No console.error or uncaught throw at runtime (verify phase enforces this). + * Every fetch() has a .catch() that surfaces a user-visible status, not silent fail. + * One module per concern, no monolithic file > 500 lines. + * No new MCP-server / Python changes; this rebuild is UI-only. + * Sigma v3 vendored at ui/clinical/vendor/sigma.min.js (already downloaded). + * graphology v0.25.4 vendored at ui/clinical/vendor/graphology.umd.min.js (already downloaded). + * sigma exports window.Sigma; graphology exports window.graphology — use these globals from vendor scripts. + * Duplicate node guard: track loadedPhases (Set) and pendingPhases (Set) in streaming.js; + check both before every /api/graph/phase fetch to prevent addNode on existing id (Sigma throws). + * SSE done event: call source.close() in the 'done' event handler to prevent auto-reconnect loop. +` + +phase('Spec') + +// 3 spec agents in parallel — each writes ONE markdown spec under +// ui/clinical/docs/. They don't touch JS so parallel is safe. +const specs = await parallel([ + () => agent(`${CTX} + +ROLE: Navigation-model designer for the clinical-hospital graph rebuild. + +WRITE: ui/clinical/docs/01-navigation-model.md (markdown spec, 80–150 lines). + +INCLUDE: + * The zoom-state state machine (current_depth: 0..6, transitions on + scroll, pinch, double-click). + * Which /api/graph/phase calls fire at each depth level. + * What stays visible vs what fades in vs what fades out as depth changes. + * Hit-test strategy at each depth (cursor radius, label visibility). + * Pan/zoom behaviour (free pan; zoom is the depth control). + * How a returning user lands (default depth 1? remember last?). + +RETURN the schema-shaped summary. Files written goes in 'pseudocode' +as a brief outline of the actual code structure the implementer will follow.`, + { schema: SPEC_SCHEMA, label: 'spec:navigation' }), + + () => agent(`${CTX} + +ROLE: Sub-graph drill-down designer. + +WRITE: ui/clinical/docs/02-sub-graph-drill-down.md (markdown spec, 80–150 lines). + +INCLUDE: + * How a node-click triggers a sub-graph view (modal? side panel? + routed page? Justify the choice given the navigation model.) + * Which server endpoints provide the chain-of-call / chain-of-action + data for a given node (use /api/graph for cumulative + filter + client-side, or do we need a new endpoint?). + * Sub-graph rendering: separate Sigma instance? Reuse main? Justify. + * Back-navigation from sub-graph to big-picture (and resume depth). + * Per-kind sub-graph variants (memory shows its causal chain; + symbol shows defined_in + calls + member_of; file shows tool + accesses). + +If a new server endpoint is genuinely needed, list it under +'open_questions' so the user can decide whether to add it later.`, + { schema: SPEC_SCHEMA, label: 'spec:sub-graph' }), + + () => agent(`${CTX} + +ROLE: Streaming + initial-load wire designer. + +WRITE: ui/clinical/docs/03-streaming-load.md (markdown spec, 80–150 lines). + +INCLUDE: + * Cold-start sequence: progress poll → CXGB snapshot if available → + fall back to /api/graph JSON → engage SSE for tail batches. + * How to map SSE batch events to per-depth additions without + overwhelming the renderer (queue + drain pattern; cite a max + additions per frame). + * Error/reconnect strategy when SSE drops mid-build. + * How the renderer handles a position-less node (no entry in + /api/quadtree yet) — initial spawn at neighbour centroid or domain + anchor; never NaN. + * Loading UI: progress bar wired to /api/graph/progress.pct, + phase-name display.`, + { schema: SPEC_SCHEMA, label: 'spec:streaming' }), +]) + +const validSpecs = specs.filter(Boolean) +log(`Specs complete: ${validSpecs.length}/3`) +for (const s of validSpecs) log(` - ${s.title}`) + +phase('Scaffold') + +const scaffold = await agent(`${CTX} + +ROLE: Scaffold engineer. + +CREATE the ui/clinical/ directory with this exact layout: + ui/clinical/ + index.html ← boot page with one
, + no inline scripts beyond a single + - - - - @@ -580,6 +579,8 @@ + + diff --git a/ui/unified/js/chain_panel.js b/ui/unified/js/chain_panel.js new file mode 100644 index 00000000..eb1da59a --- /dev/null +++ b/ui/unified/js/chain_panel.js @@ -0,0 +1,193 @@ +// Cortex — Chain Panel +// Opens a side panel showing a Mermaid flowchart DAG for node chain analysis. +// Triggered by JUG.emit('chain:open', {id, label}). +(function () { + var BG = '#0d1117', ACCENT = '#00d4ff'; + var _root = null, _svgHost = null, _titleEl = null, _metaEl = null; + var _depthSel = null, _typeSel = null, _stateEl = null; + var _current = { id: null, label: '' }; + var _mermaidReady = false; + var _renderSeq = 0; + + function ensureMermaid() { + if (_mermaidReady) return true; + if (typeof window.mermaid === 'undefined') return false; + window.mermaid.initialize({ + startOnLoad: false, + theme: 'dark', + securityLevel: 'strict', + flowchart: { useMaxWidth: true, htmlLabels: false }, + }); + _mermaidReady = true; + return true; + } + + function build() { + if (_root) return; + _root = document.createElement('div'); + _root.id = 'chain-panel'; + _root.style.cssText = [ + 'position:fixed', 'top:0', 'right:0', 'bottom:0', 'width:40%', + 'min-width:360px', 'max-width:680px', 'background:' + BG, + 'border-left:1px solid rgba(0,212,255,0.35)', 'z-index:400', + 'box-shadow:-8px 0 32px rgba(0,0,0,0.5)', 'display:none', + 'flex-direction:column', 'color:#c4d4dc', + 'font-family:-apple-system,Inter,system-ui,sans-serif', + ].join(';'); + + var header = document.createElement('div'); + header.style.cssText = 'display:flex;align-items:center;gap:10px;' + + 'padding:14px 16px;border-bottom:1px solid rgba(0,212,255,0.2)'; + _titleEl = document.createElement('div'); + _titleEl.style.cssText = 'flex:1;font-weight:600;font-size:13px;color:' + + ACCENT + ';overflow:hidden;text-overflow:ellipsis;white-space:nowrap'; + _titleEl.textContent = 'Chain'; + var closeBtn = document.createElement('button'); + closeBtn.textContent = '✕'; + closeBtn.setAttribute('aria-label', 'Close chain panel'); + closeBtn.style.cssText = 'background:transparent;border:none;color:' + ACCENT + + ';font-size:16px;cursor:pointer;line-height:1;padding:4px'; + closeBtn.addEventListener('click', close); + header.appendChild(_titleEl); + header.appendChild(closeBtn); + + var controls = document.createElement('div'); + controls.style.cssText = 'display:flex;gap:12px;align-items:center;' + + 'padding:10px 16px;border-bottom:1px solid rgba(0,212,255,0.12);font-size:11px'; + _depthSel = mkSelect('Depth', + [1, 2, 3, 4, 5, 6].map(function (d) { return { v: d, t: 'Depth ' + d }; }), 2); + _typeSel = mkSelect('Type', [ + { v: 'causal', t: 'Causal' }, + { v: 'impact', t: 'Impact' }, + { v: 'call', t: 'Call' }, + ], 0); + _depthSel.addEventListener('change', refetch); + _typeSel.addEventListener('change', refetch); + controls.appendChild(labelWrap('Depth', _depthSel)); + controls.appendChild(labelWrap('Type', _typeSel)); + + _metaEl = document.createElement('div'); + _metaEl.style.cssText = 'padding:6px 16px;font-size:10px;color:#7a8e9c;' + + 'border-bottom:1px solid rgba(0,212,255,0.08);min-height:1.4em'; + + _svgHost = document.createElement('div'); + _svgHost.style.cssText = 'flex:1;overflow:auto;padding:16px;' + + 'display:flex;align-items:flex-start;justify-content:center'; + + _stateEl = document.createElement('div'); + _stateEl.style.cssText = 'padding:24px 16px;text-align:center;' + + 'color:#7a8e9c;font-size:12px'; + + _root.appendChild(header); + _root.appendChild(controls); + _root.appendChild(_metaEl); + _root.appendChild(_stateEl); + _root.appendChild(_svgHost); + document.body.appendChild(_root); + } + + function mkSelect(name, opts, defIdx) { + var s = document.createElement('select'); + s.setAttribute('aria-label', name); + s.style.cssText = 'background:#11202b;color:#c4d4dc;border:1px solid ' + + 'rgba(0,212,255,0.3);border-radius:3px;padding:3px 6px;font-size:11px'; + opts.forEach(function (o, i) { + var el = document.createElement('option'); + el.value = o.v; el.textContent = o.t; + if (i === defIdx) el.selected = true; + s.appendChild(el); + }); + return s; + } + function labelWrap(text, sel) { + var wrap = document.createElement('label'); + wrap.style.cssText = 'display:flex;align-items:center;gap:5px;color:#7a8e9c'; + var span = document.createElement('span'); + span.textContent = text; + wrap.appendChild(span); + wrap.appendChild(sel); + return wrap; + } + + function showState(msg, isError) { + _stateEl.style.display = 'block'; + _stateEl.style.color = isError ? '#FF8080' : '#7a8e9c'; + _stateEl.textContent = msg; + _svgHost.innerHTML = ''; + } + function clearState() { _stateEl.style.display = 'none'; } + + function open(payload) { + if (!payload || !payload.id) return; + build(); + _current.id = payload.id; + _current.label = payload.label || payload.id; + _titleEl.textContent = 'Chain: ' + _current.label; + _root.style.display = 'flex'; + refetch(); + } + + function close() { + if (_root) _root.style.display = 'none'; + } + + function refetch() { + if (!_current.id) return; + var depth = _depthSel.value, type = _typeSel.value; + var seq = ++_renderSeq; + _metaEl.textContent = ''; + showState('Loading chain…', false); + var url = '/api/graph/chain?id=' + encodeURIComponent(_current.id) + + '&depth=' + encodeURIComponent(depth) + + '&type=' + encodeURIComponent(type); + fetch(url) + .then(function (r) { + if (!r.ok) throw new Error('HTTP ' + r.status); + return r.json(); + }) + .then(function (data) { + if (seq !== _renderSeq) return; // superseded by a newer request + if (data.error) { showState(data.error, true); return; } + if (!data.mermaid) { showState('No chain for this node.', false); return; } + renderMermaid(data, seq); + }) + .catch(function (err) { + if (seq !== _renderSeq) return; + showState('Failed to load chain: ' + err.message, true); + }); + } + + function renderMermaid(data, seq) { + if (!ensureMermaid()) { showState('Mermaid not loaded.', true); return; } + var meta = data.node_count + ' nodes · ' + data.edge_count + ' edges'; + if (data.truncated) meta += ' · truncated (depth/size cap)'; + _metaEl.textContent = meta; + var graphId = 'chain-svg-' + seq; + Promise.resolve() + .then(function () { return window.mermaid.render(graphId, data.mermaid); }) + .then(function (out) { + if (seq !== _renderSeq) return; + clearState(); + _svgHost.innerHTML = (out && out.svg) || ''; + }) + .catch(function (err) { + if (seq !== _renderSeq) return; + showState('Render error: ' + (err && err.message || err), true); + }); + } + + // Esc closes the panel. + document.addEventListener('keydown', function (e) { + if (e.key === 'Escape' && _root && _root.style.display !== 'none') close(); + }); + + function attach() { + if (!window.JUG || !JUG.on) { setTimeout(attach, 60); return; } + JUG.on('chain:open', open); + } + if (document.readyState === 'loading') { + document.addEventListener('DOMContentLoaded', attach); + } else { + attach(); + } +})(); diff --git a/ui/unified/js/knowledge.js b/ui/unified/js/knowledge.js index 1f355447..c7394bcb 100644 --- a/ui/unified/js/knowledge.js +++ b/ui/unified/js/knowledge.js @@ -22,6 +22,7 @@ var pageDone = false; var lastFetchToken = 0; var scrolledSinceFetch = false; + var _pageObserver = null; // track the active IntersectionObserver so we can disconnect before recreating // Server-known filter facets. Loaded once on first show() so chips // can show ALL options up-front (not only what's been paged). @@ -218,10 +219,6 @@ }); } - // Compatibility shim: old call sites expected an in-memory list. - // After lazy-load, "all memories" is what we've fetched so far. - function getMemories() { return memoriesAccum; } - function getDomains() { return Object.keys(domainsSeen).sort(); } // ── Build the view (chrome only — grid populated by _renderPagedGrid) ── @@ -448,10 +445,12 @@ // root to container made the sentinel always count as "inside the // root" so isIntersecting was permanently true (or permanently // false depending on overflow), and pagination stalled. + if (_pageObserver) { _pageObserver.disconnect(); _pageObserver = null; } var io = new IntersectionObserver(function(entries) { entries.forEach(function(e) { if (e.isIntersecting) _fetchPage(); }); }, { root: null, rootMargin: '400px' }); io.observe(sentinel); + _pageObserver = io; } function _renderPagedGrid() { @@ -519,67 +518,6 @@ _refreshStatsBar(); } - // Legacy alias kept for anything still calling it. - function rebuildGrid() { _renderPagedGrid(); } - - function populateGrid(grid, filtered, allMems) { - grid.innerHTML = ''; - - if (filtered.length === 0) { - var empty = el('div', 'kv-empty'); - var emptyTitle = el('div', 'kv-empty-title'); - emptyTitle.textContent = 'No memories found'; - empty.appendChild(emptyTitle); - var emptyText = document.createElement('div'); - emptyText.className = 'kv-empty-sub'; - emptyText.textContent = searchQuery - ? 'No memories match "' + searchQuery + '"' - : 'No memories in this domain yet'; - empty.appendChild(emptyText); - grid.appendChild(empty); - return; - } - - // Global memories pinned at top - var globals = filtered.filter(function(m) { return m.isGlobal; }); - var nonGlobals = filtered.filter(function(m) { return !m.isGlobal; }); - - if (globals.length > 0 && currentDomain === 'all') { - var banner = el('div', 'kv-global-banner'); - var bannerTitle = el('div', 'kv-global-title'); - bannerTitle.textContent = 'Rules That Apply Everywhere'; - banner.appendChild(bannerTitle); - grid.appendChild(banner); - - globals.forEach(function(m) { - grid.appendChild(buildCard(m, allMems)); - }); - } - - // Group by domain if showing all - if (currentDomain === 'all' || currentDomain === 'global') { - var byDomain = {}; - nonGlobals.forEach(function(m) { - var d = m.domain || 'unknown'; - if (!byDomain[d]) byDomain[d] = []; - byDomain[d].push(m); - }); - var domainKeys = Object.keys(byDomain).sort(); - domainKeys.forEach(function(d) { - var header = el('div', 'kv-domain-header'); - header.textContent = shortDomain(d); - grid.appendChild(header); - byDomain[d].forEach(function(m) { - grid.appendChild(buildCard(m, allMems)); - }); - }); - } else { - nonGlobals.forEach(function(m) { - grid.appendChild(buildCard(m, allMems)); - }); - } - } - // ── Symbol ↔ memory impact resolution ── // A memory is "impacted by" a code symbol when (a) a file touched by // the memory (path / file_refs / file_path) is the symbol's parent @@ -1223,29 +1161,6 @@ return html.join(''); } - function addMeta(parent, label, value) { - var item = el('div', 'kv-expanded-meta-item'); - var l = el('span', 'kv-expanded-meta-label'); - l.textContent = label; - var v = el('span', 'kv-expanded-meta-val'); - v.textContent = value; - item.appendChild(l); - item.appendChild(v); - parent.appendChild(item); - } - - function addMetaColored(parent, label, value, color) { - var item = el('div', 'kv-expanded-meta-item'); - var l = el('span', 'kv-expanded-meta-label'); - l.textContent = label; - var v = el('span', 'kv-expanded-meta-val'); - v.textContent = value; - v.style.color = color; - item.appendChild(l); - item.appendChild(v); - parent.appendChild(item); - } - function domainPill(label, value, isGlobal) { var pill = el('button', 'kv-domain-pill'); if (isGlobal) pill.classList.add('kv-pill-global'); diff --git a/ui/unified/js/polling.js b/ui/unified/js/polling.js index 7f8b874a..d5c55ae7 100644 --- a/ui/unified/js/polling.js +++ b/ui/unified/js/polling.js @@ -1,100 +1,9 @@ -// Cortex Neural Graph — Async Progressive Batch Streaming +// Cortex Neural Graph — LOD status + stats poller. +// The 916 MB /api/graph + /api/discussions payload fetchers are GONE. +// Stats now come from the lightweight /api/graph/progress meta; the +// graph view (workflow_graph.js) owns L0/L1 loading via /api/graph/phase. (function() { - var abortController = null; - - function fetchGraph() { - // Lazy-load: only pay the multi-MB /api/graph cost when the - // user is actually on the Graph tab. Knowledge / Board / Wiki - // each own their own paged data path and don't need this. - if (window.JUG && JUG.state && JUG.state.activeView !== 'graph') { - updateStatus('Online — graph standby'); - hideLoading(); - return; - } - if (abortController) abortController.abort(); - abortController = new AbortController(); - var signal = abortController.signal; - - fetch(JUG.API_URL, { signal: signal }) - .then(function(res) { - if (!res.ok) throw new Error('HTTP ' + res.status); - return res.json(); - }) - .then(function(data) { - if (signal.aborted) return; - - // Retry if server is still building the graph cache - if (data.meta && (data.meta.warming || data.meta.stage === 'building')) { - updateStatus('Building graph...'); - setTimeout(function() { if (!signal.aborted) fetchGraph(); }, 1000); - // Stats from progress meta so the panel isn't stuck at '--' - updateStats(data.meta || {}); - return; - } - - // Phase-driven loader owns `lastData` — don't clobber it if it's - // already been populated via /api/graph/phase appends. Only seed - // from the /api/graph snapshot when the phase loader hasn't - // landed anything yet (fast-boot case where the cache was warm). - var cur = JUG.state.lastData; - var phaseBootstrapped = cur && cur.nodes && cur.nodes.length > 0; - if (!phaseBootstrapped) { - JUG.state.lastData = data; - JUG.buildGraph(data); - } - updateStats(data.meta || {}); - hideLoading(); - _loadDiscussionBatch(0); - - var count = (data.meta || {}).node_count || (data.nodes || []).length; - updateStatus('Online (' + count + ' nodes)'); - }) - .catch(function(err) { - if (err.name === 'AbortError') return; - console.warn('[cortex] Graph fetch error:', err.message); - useFallback(); - }); - } - - function updateStats(meta) { - setText('s-dom', meta.domain_count || 0); - setText('s-mem', meta.memory_count || 0); - setText('s-ent', meta.entity_count || 0); - setText('s-edge', meta.edge_count || 0); - - setText('s-nodes', meta.node_count || 0); - - // System vitals - var sv = meta.system_vitals; - if (sv) { - var svEl = document.getElementById('system-vitals'); - if (svEl) svEl.style.display = 'block'; - setText('sv-heat', sv.mean_heat ? sv.mean_heat.toFixed(3) : '--'); - var cp = sv.consolidation_pipeline || {}; - setText('sv-labile', cp.labile || 0); - setText('sv-eltp', cp.early_ltp || 0); - setText('sv-lltp', cp.late_ltp || 0); - setText('sv-cons', cp.consolidated || 0); - setText('sv-recon', cp.reconsolidating || 0); - } - - // Benchmark summary — R@10 + MRR side by side - var bm = meta.benchmarks; - if (bm) { - var el = document.getElementById('benchmark-summary'); - if (el) el.style.display = 'block'; - if (bm.LongMemEval) setText('b-lme', fmtBench(bm.LongMemEval)); - if (bm.LoCoMo) setText('b-loc', fmtBench(bm.LoCoMo)); - if (bm.BEAM) setText('b-beam', fmtBench(bm.BEAM)); - } - } - - function fmtBench(bm) { - var parts = []; - if (bm.recall_10 !== undefined) parts.push('R@10 ' + Math.round(bm.recall_10) + '%'); - if (bm.mrr !== undefined) parts.push('MRR .' + Math.round(bm.mrr * 1000)); - return parts.join(' | ') || '--'; - } + var _readyEmitted = false; function setText(id, val) { var el = document.getElementById(id); @@ -102,8 +11,7 @@ } function updateStatus(text) { - var el = document.getElementById('status-text'); - if (el) el.textContent = text; + setText('status-text', text); } function hideLoading() { @@ -114,72 +22,54 @@ } } - function useFallback() { - var fallback = { - nodes: [ - { id: 'dom_1', type: 'domain', label: 'Sample Domain', domain: 'sample', color: '#6366f1', size: 8, group: 'sample', sessionCount: 10, confidence: 0.8 }, - { id: 'entry_1', type: 'entry-point', label: 'system design', domain: 'sample', color: '#00d4ff', size: 5, group: 'sample', frequency: 4 }, - ], - edges: [ - { source: 'dom_1', target: 'entry_1', type: 'has-entry', weight: 0.7 }, - ], - clusters: [], - meta: { domain_count: 1, node_count: 2, edge_count: 1, total_batches: 1 }, - }; - JUG.state.lastData = fallback; - JUG.buildGraph(fallback); - updateStats(fallback.meta); + function updateStats(meta) { + if (!meta) return; + setText('s-dom', meta.domain_count || 0); + setText('s-mem', meta.memory_count || 0); + setText('s-ent', meta.entity_count || 0); + setText('s-edge', meta.edge_count || 0); + setText('s-nodes', meta.node_count || 0); + } + + function emitReady() { + if (_readyEmitted) return; + _readyEmitted = true; + if (window.JUG && JUG.emit) JUG.emit('graph:ready', {}); + } + + function boot() { hideLoading(); - updateStatus('Offline (sample)'); + fetch('/api/graph/progress') + .then(function(r) { return r.ok ? r.json() : null; }) + .then(function(p) { + if (p) { updateStats(p); updateStatus('Online'); } + emitReady(); + }) + .catch(function(err) { + console.warn('[cortex] progress fetch error:', err.message); + updateStatus('Offline'); + emitReady(); + }); } - // Clock + // Clock. setInterval(function() { var d = new Date(); - var el = document.getElementById('status-time'); - if (el) el.textContent = [d.getHours(), d.getMinutes(), d.getSeconds()] - .map(function(v) { return String(v).padStart(2, '0'); }).join(':'); + setText('status-time', [d.getHours(), d.getMinutes(), d.getSeconds()] + .map(function(v) { return String(v).padStart(2, '0'); }).join(':')); }, 1000); - // Boot — delay initial fetch. fetchGraph() short-circuits unless - // activeView === 'graph', so this is cheap on Knowledge / Board / - // Wiki landings. + // Boot once the DOM is ready. if (document.readyState === 'loading') { - document.addEventListener('DOMContentLoaded', function() { - setTimeout(fetchGraph, 500); - }); + document.addEventListener('DOMContentLoaded', boot); } else { - setTimeout(fetchGraph, 500); + boot(); } - // Trigger the graph fetch when the user actually switches to the - // Graph tab (lazy-load semantics). + // When the user switches to the Graph tab, make sure L0 has been kicked. if (window.JUG && JUG.on) { JUG.on('state:activeView', function(ev) { - if (ev && ev.value === 'graph') setTimeout(fetchGraph, 50); + if (ev && ev.value === 'graph') emitReady(); }); } - - function _loadDiscussionBatch(batch) { - var batchSize = 500; - fetch(JUG.API_URL.replace('/api/graph', '/api/discussions') + '?batch=' + batch + '&batch_size=' + batchSize) - .then(function(r) { return r.json(); }) - .then(function(data) { - if (!data.nodes || !data.nodes.length) return; - JUG.addBatchToGraph(data); - var discEl = document.getElementById('s-disc'); - if (discEl && JUG.state.lastData) { - var count = JUG.state.lastData.nodes.filter(function(n) { return n.type === 'discussion'; }).length; - discEl.textContent = count; - } - if (data.meta && batch < (data.meta.total_batches || 1) - 1) { - setTimeout(function() { _loadDiscussionBatch(batch + 1); }, 200); - } - }) - .catch(function(err) { - console.warn('[cortex] Discussion batch error:', err.message); - }); - } - - // No auto-refresh — user triggers manually via Reset button or page reload })(); diff --git a/ui/unified/js/timeline.js b/ui/unified/js/timeline.js index d1ac2268..3a3df8d8 100644 --- a/ui/unified/js/timeline.js +++ b/ui/unified/js/timeline.js @@ -22,6 +22,7 @@ var boardPagesFetched = 0; var boardFetchToken = 0; var boardScrolledSinceFetch = false; + var _boardObserver = null; // track the active IntersectionObserver so we can disconnect before recreating // Server-known facets + active filters (mirror Knowledge tab). var boardFacets = null; @@ -502,10 +503,12 @@ function _boardAttachIntersectionObserver(sentinel) { if (!('IntersectionObserver' in window)) return; + if (_boardObserver) { _boardObserver.disconnect(); _boardObserver = null; } var io = new IntersectionObserver(function(entries) { entries.forEach(function(e) { if (e.isIntersecting) _boardFetchPage(); }); }, { root: null, rootMargin: '400px' }); io.observe(sentinel); + _boardObserver = io; } function _boardAttachScrollBackstop(sentinel) { diff --git a/ui/unified/js/wiki.js b/ui/unified/js/wiki.js index 03ca9088..9d111e93 100644 --- a/ui/unified/js/wiki.js +++ b/ui/unified/js/wiki.js @@ -22,19 +22,6 @@ index: 'Indexes', misc: 'Miscellaneous', }; - var KIND_ICONS = { - adr: '', - spec: '', - lesson: '', - convention: '', - note: '', - guide: '', - domain: '', - entity: '', - index: '', - misc: '', - }; - var MATURITY = { stub: { label: 'Stub', cls: 'wiki-mat-stub' }, draft: { label: 'Draft', cls: 'wiki-mat-draft' }, diff --git a/ui/unified/js/workflow_graph.js b/ui/unified/js/workflow_graph.js index 383c0db0..ea3340b8 100644 --- a/ui/unified/js/workflow_graph.js +++ b/ui/unified/js/workflow_graph.js @@ -1,734 +1,427 @@ -// Cortex — Workflow Graph (D3 v7 force layout): orchestration + forces. -// Target: many small brain-region clouds, each internally structured, -// with thin long-range threads between clouds where files/entities are shared. -// Schema: mcp_server/core/workflow_graph_schema.py -// node kinds: domain, skill, command, hook, agent, tool_hub, file, memory, discussion, entity -// edge kinds: in_domain, tool_used_file, command_in_hub, invoked_skill, triggered_hook, spawned_agent, about_entity -// Public API: window.JUG.renderWorkflowGraph(container, data) -> { destroy, select, data }. -// Renderers are provided by workflow_graph_render_svg.js / _canvas.js on JUG._wfg. +// Cortex — Workflow Graph (LOD canvas overview). +// Replaces the 600K-node D3 force simulation with a level-of-detail map: +// L0 → one labelled bubble per domain (sized by node count), laid out +// on a deterministic spiral. No physics, no per-frame ticking. +// L1 → click a domain bubble to fan its children around the hub. +// Any non-domain click → JUG.emit('chain:open', {id, label}) so the +// chain panel renders a bounded Mermaid DAG for that node. +// +// Public API (unchanged surface): JUG.renderWorkflowGraph(container, data) +// → { destroy, select, reflow, data }. The bridge calls this with the +// L0 payload; this module also self-loads L0 on 'graph:ready'. +// +// Schema (server: workflow_graph.v1): +// node: { id, kind, label|name, domain_id?, size?|count?|weight? } +// edge: { source, target, kind } (in_domain links child → domain) (function () { - var D3_URL = 'https://cdn.jsdelivr.net/npm/d3@7.8.5/dist/d3.min.js'; - var CANVAS_THRESHOLD = 2000; - - // Tokens — kind-driven radii, colors, edge distances, strengths. - var KIND_RADIUS = { - domain: 26, tool_hub: 14, agent: 10, skill: 10, command: 8, - hook: 9, memory: 7, discussion: 8, entity: 6, file: 5, mcp: 12, - symbol: 2, - }; var KIND_COLOR = { - domain: '#FCD34D', // gold hub - tool_hub: '#F97316', // fallback (per-tool colors override in node.color) - skill: '#FB923C', // orange - command: '#FACC15', // yellow — distinct from Bash-tool orange - hook: '#A855F7', // purple - agent: '#EC4899', // pink - mcp: '#6366F1', // indigo - memory: '#10B981', // emerald fallback - discussion: '#EF4444', // red - entity: '#50B0C8', // teal - file: '#06B6D4', // cyan fallback — primary-tool color overrides - symbol: '#64748B', // slate — inherits parent-file color via node.color - }; - // Radial hierarchy inside each domain cloud — FIVE concentric/sector levels: - // L1 setup (skills/hooks/commands/agents) @ r = SETUP_R front sector - // L2 tools (tool_hub) @ r = TOOL_R front sector - // L3 files (primary-tool colored) @ r = FILE_R front sector - // L4 discussions @ r = DISC_R side sector A - // L5 memories @ r = MEM_R side sector B - // MCPs sit INWARD (between domains) and bridge out. - // Radii are sized so the rings are visually separated — each shell has - // a band of at least 40px between it and the next. Large enough that - // even dense domains keep their structure legible when zoomed out. - var SETUP_R = 70; - var TOOL_R = 140; - var FILE_R = 220; - var DISC_R = 150; - var MEM_R = 150; - var MCP_R = 50; - // Symbols form a dense cloud JUST outside the file ring — this is the - // "petal" shell that gives the graph the screenshot look. The cloud - // is anchored per-file so each file becomes a small satellite clump. - var SYM_R_OUTER = 290; // outer edge of the symbol shell - var SYM_R_SPREAD = 32; // radial jitter per-file-group - var SYM_CLUMP_R = 18; // tight clumping distance around parent file - // L5+E entity layer — see docs/adr/ADR-0047-entity-positioning-gap10.md - // for the full provenance of every constant below (Kekulé centroid + - // Alexander heat gate + Thompson physics retune, each tied to a - // specific live-data measurement on 2026-04-23). - var ENTITY_DOMAIN_BLEND = 0.15; // ADR-0047: α in (1−α)·mem_centroid + α·domain_hub - var ENTITY_ORPHAN_R = FILE_R + 40; // ADR-0047: orphan-ring radius (just past L3 files) - var ENTITY_HEAT_TAU = 0.25; // ADR-0047: heat threshold below which entities are slot-free - var ENTITY_TOPN = 40; // ADR-0047: per-domain visible-entity floor (NOT a ceiling — OR-gated with TAU) - var SECTOR_SETUP_HALF = Math.PI / 2.6; // ~69° - var SECTOR_SIDE_HALF = Math.PI / 6.5; // ~28° - var SECTOR_SIDE_ANGLE = Math.PI * 0.72; // ~130° from outward axis - // Shells drawn as faint guide arcs behind the nodes (one per L1/L2/L3 - // per domain, plus disc/mem arcs). Level tokens consumed by the SVG - // renderer to paint ring outlines + labels. - var SHELL_LEVELS = [ - { key: 'L1', r: SETUP_R, label: 'L1 setup' }, - { key: 'L2', r: TOOL_R, label: 'L2 tools' }, - { key: 'L3', r: FILE_R, label: 'L3 files' }, - { key: 'L6', r: SYM_R_OUTER, label: 'L6 symbols' }, - ]; - // Per-tool angles (local to the domain's outward axis), in radians. - var TOOL_LOCAL_ANGLE = { - Edit: 0, - Write: -Math.PI / 12, - Read: Math.PI / 12, - Grep: -Math.PI / 6, - Glob: Math.PI / 6, - Bash: -Math.PI / 3.6, - Task: Math.PI / 3.6, - }; - var EDGE_DISTANCE = { - in_domain: 0, // satisfied by slot-anchoring, keep slack - tool_used_file: 0, - command_in_hub: 0, // bash_hub → command containment - invoked_skill: 0, - triggered_hook: 0, - spawned_agent: 0, - about_entity: 20, - discussion_touched_file: 80, - command_touched_file: 60, - invoked_mcp: 90, - defined_in: 22, // symbol sits close to its file - calls: 24, // caller ↔ callee tight - imports: 60, // short effective length — gain-bounded - member_of: 10, // method ↔ class tight + domain: '#FCD34D', tool_hub: '#F97316', skill: '#FB923C', + command: '#FACC15', hook: '#A855F7', agent: '#EC4899', mcp: '#6366F1', + memory: '#10B981', discussion: '#EF4444', entity: '#50B0C8', + file: '#06B6D4', symbol: '#64748B', }; - var EDGE_STRENGTH = { - in_domain: 0.0, // layout is slot-anchored; links = slack - tool_used_file: 0.0, - command_in_hub: 0.0, // containment — zero extra pull - invoked_skill: 0.0, - triggered_hook: 0.0, - spawned_agent: 0.0, - about_entity: 0.2, - discussion_touched_file: 0.08, - command_touched_file: 0.08, - invoked_mcp: 0.04, // long springs — MCPs bridge domains - defined_in: 0.95, // dominant anchor - calls: 0.12, // halved - imports: 0.04, // 4.5× gain cut — no runaway resonance - member_of: 0.60, - }; - var CROSS_DOMAIN_DISTANCE = 260; - var CROSS_DOMAIN_STRENGTH = 0.02; + var MIN_R = 14, MAX_R = 64; // domain bubble radius range + var CHILD_R = 7; // L1 child node radius + var CHILD_RING = 130; // base orbit distance for children - function ensureD3(cb) { - if (window.d3 && window.d3.forceSimulation) return cb(); - var existing = document.querySelector('script[data-cortex-d3]'); - if (existing) { existing.addEventListener('load', cb); return; } - var s = document.createElement('script'); - s.src = D3_URL; s.async = true; s.defer = true; - s.setAttribute('data-cortex-d3', '1'); - s.onload = cb; - s.onerror = function () { console.error('[cortex] failed to load d3 from ' + D3_URL); }; - document.head.appendChild(s); + function colorOf(n) { return n.color || KIND_COLOR[n.kind] || '#50C8E0'; } + function labelOf(n) { + return n.label || n.name || n.title || n.path || n.id || ''; + } + function countOf(n) { + if (n.count != null) return n.count; + if (n.size != null) return n.size; + if (n.node_count != null) return n.node_count; + if (n.weight != null) return n.weight; + return 1; + } + + // ── Deterministic spiral layout for domain hubs (Fibonacci angle) ── + function layoutDomains(domains, w, h) { + var cx = w / 2, cy = h / 2; + var N = Math.max(domains.length, 1); + var phi = Math.PI * (3 - Math.sqrt(5)); + var baseR = Math.min(w, h) * 0.40; + var maxC = 1; + for (var i = 0; i < domains.length; i++) { + maxC = Math.max(maxC, countOf(domains[i])); + } + var pos = {}; + domains.forEach(function (d, i) { + var r = baseR * Math.sqrt((i + 0.5) / N); + var theta = i * phi; + var frac = Math.sqrt(countOf(d) / maxC); // area-proportional radius + pos[d.id] = { + x: cx + r * Math.cos(theta), + y: cy + r * Math.sin(theta), + radius: MIN_R + (MAX_R - MIN_R) * frac, + }; + }); + return pos; } function renderWorkflowGraph(container, data) { if (!container) throw new Error('renderWorkflowGraph: container required'); - container.innerHTML = ''; - var handle = { destroy: function () {}, select: function () {}, data: data }; - // Tilemap gate — query string ``?viz=tilemap`` swaps the entire - // d3-force pipeline for the deck.gl + Datashader server-tile path. - // The legacy renderer stays as the default until the new path is - // hardened. The tilemap module handles its own data fetching - // (/api/quadtree, /api/tile/*) so we don't pass the cached graph. var qs = (window.location && window.location.search) || ''; if (qs.indexOf('viz=tilemap') !== -1 && window.JUG && typeof window.JUG.mountTilemap === 'function') { var p = window.JUG.mountTilemap(container); + var h = { destroy: function () {}, select: function () {}, data: data }; Promise.resolve(p).then(function (impl) { - if (impl && impl.destroy) handle.destroy = impl.destroy; + if (impl && impl.destroy) h.destroy = impl.destroy; }); - return handle; + return h; } - ensureD3(function () { - var impl = mount(container, data || { nodes: [], edges: [] }); - handle.destroy = impl.destroy; - handle.select = impl.select; - }); - return handle; + return mount(container, data || { nodes: [], edges: [] }); } function mount(container, data) { - var d3 = window.d3; - var wfg = window.JUG._wfg; - var nodes = (data.nodes || []).map(function (n) { return Object.assign({}, n); }); - // For very large graphs (>15k nodes) skip the simulation-visible - // edges entirely — symbol→file/symbol→symbol edges number in the - // tens of thousands and d3.forceLink on that many pairs freezes - // the main thread. The slot layout already encodes containment - // geometrically, so the visual edge of every symbol→file pair is - // redundant. Keep only structural edges (domain hubs, tools, - // files ↔ tools, discussions ↔ files, memories) for rendering. - var HEAVY = nodes.length > 8000; - var _nidSet = {}; - for (var _ni = 0; _ni < nodes.length; _ni++) _nidSet[nodes[_ni].id] = 1; - // Keep AST edges in the simulation — they carry real semantic - // meaning (symbol contained in file, symbol calls another symbol, - // file imports symbol, method belongs to class). Layout should - // REFLECT this connectivity, not randomize it. Only drop the - // really dense symbol↔symbol edges (`calls`) under extreme load - // to keep tick-rate manageable. - var EXTREME = nodes.length > 25000; - var renderedEdges; - if (EXTREME) { - renderedEdges = (data.edges || []).filter(function (e) { - return e.kind !== 'calls'; - }); - } else { - renderedEdges = data.edges || []; - } - // Drop dangling edges — endpoints must exist in the nodes array. - renderedEdges = renderedEdges.filter(function (e) { - var s = typeof e.source === 'object' ? e.source.id : e.source; - var t = typeof e.target === 'object' ? e.target.id : e.target; - return _nidSet[s] && _nidSet[t]; - }); - var edges = renderedEdges.map(function (e) { - return Object.assign({}, e, { - source: typeof e.source === 'object' ? e.source.id : e.source, - target: typeof e.target === 'object' ? e.target.id : e.target, - }); - }); - var width = container.clientWidth || window.innerWidth; - var height = container.clientHeight || window.innerHeight; + container.innerHTML = ''; + var state = { + domains: [], + domainPos: {}, + children: {}, // domainId → [childNode] + expanded: {}, // domainId → true + edges: [], + scale: 1, panX: 0, panY: 0, + hover: null, + }; - // Topology prep uses the FULL edge set (parent-file map needs - // `defined_in` edges) but the simulation only sees the rendered set. - var ctx = prepareTopology(nodes, data.edges || [], width, height); - ctx.edges = edges; // simulation edges (possibly filtered) - ctx.KIND_RADIUS = KIND_RADIUS; - ctx.KIND_COLOR = KIND_COLOR; - // HEAVY: pin symbols at their slot positions so d3 treats them as - // immovable anchors (skip charge, skip link, skip collide for - // pinned nodes). The layout is already deterministic via slotOf; - // simulating 10k+ symbols adds no visual value, only CPU cost. - // Seed symbols ALONG THE OUTWARD RAY from the domain hub through - // their parent file, at a random distance past the file. This is - // the starting configuration that lets symbols flow naturally - // into the inter-domain gap space rather than orbiting the hub. - for (var pi = 0; pi < nodes.length; pi++) { - var pn = nodes[pi]; - if (pn.kind !== 'symbol') continue; - var dId = ctx.domainOf[pn.id] || 'domain:__global__'; - var anc = ctx.anchors[dId] || ctx.anchors['domain:__global__']; - var pfId = ctx.parentFile[pn.id]; - var fileSlot = pfId ? ctx.slotOf[pfId] : null; - if (!anc) continue; - var origin = fileSlot || anc; - // Outward unit vector from domain anchor → origin. - var dx = origin.x - anc.x, dy = origin.y - anc.y; - var d = Math.hypot(dx, dy); - var ox, oy; - if (d < 1) { - // Fallback: pseudo-random outward ray. - var t = (pi * 0.37) % (Math.PI * 2); - ox = Math.cos(t); oy = Math.sin(t); - } else { - ox = dx / d; oy = dy / d; - } - var pastFile = 30 + Math.random() * 120; // 30..150 px past file - var angJitter = (Math.random() - 0.5) * 0.15; // ±4° lateral spread - var cs = Math.cos(angJitter), sn = Math.sin(angJitter); - var rx = ox * cs - oy * sn; - var ry = ox * sn + oy * cs; - pn.x = origin.x + rx * pastFile; - pn.y = origin.y + ry * pastFile; - } - var panel = wfg.buildSidePanel(container); + var canvas = document.createElement('canvas'); + canvas.style.cssText = 'position:absolute;inset:0;width:100%;height:100%;cursor:grab;'; + container.appendChild(canvas); + var ctx = canvas.getContext('2d'); - // Maxwell-damped config: see ADR-0047 for the full tuning rationale - // (Thompson scaling audit on the Gap 10 N≈17k → N≈27k jump). - // * alphaDecay HEAVY: 0.028 → 0.018 (repulsive energy ∝ N²) - // * velocityDecay: 0.72 → 0.78 (ζ recovered to ~0.65) - // Other force constants unchanged — slots from computeSlots carry - // the positioning burden; physics just needs time to converge. - var slotK = HEAVY ? 1.2 : 0.85; - var chargeEn = true; - var collideI = HEAVY ? 2 : 3; - var alphaDK = HEAVY ? 0.018 : 0.022; - var velDecay = 0.78; + var width = container.clientWidth || window.innerWidth; + var height = container.clientHeight || window.innerHeight; - var sim = d3.forceSimulation(nodes) - .alpha(1.0).alphaDecay(alphaDK).velocityDecay(velDecay) - .force('link', d3.forceLink(edges).id(function (n) { return n.id; }) - .distance(linkDistance).strength(linkStrength)) - .force('slot', slotForce(ctx, slotK)) - .force('interdomain', interDomainRepelForce(ctx, 0.08)) - .force('symmulti', symbolMultiCenterForce(ctx)) - .force('collide', d3.forceCollide() - .radius(function (n) { return collisionRadius(n, ctx); }) - .strength(0.92).iterations(collideI)); - if (chargeEn) { - // Local charge (distanceMax 180) so symbol-symbol repulsion - // doesn't create long-range feedback with the multi-centroid - // attraction; domains still repel each other via interdomain. - sim.force('charge', d3.forceManyBody().strength(chargeStrength).distanceMax(180)); + function resize(w, h) { + width = w || container.clientWidth || window.innerWidth; + height = h || container.clientHeight || window.innerHeight; + var dpr = window.devicePixelRatio || 1; + canvas.width = width * dpr; + canvas.height = height * dpr; + ctx.setTransform(dpr, 0, 0, dpr, 0, 0); + state.domainPos = layoutDomains(state.domains, width, height); + draw(); } - var useCanvas = nodes.length > CANVAS_THRESHOLD; - var renderer = useCanvas - ? wfg.mountCanvas(container, ctx, sim, panel, width, height) - : wfg.mountSVG(container, ctx, sim, panel, width, height); - - function onResize() { - var w = container.clientWidth || window.innerWidth; - var h = container.clientHeight || window.innerHeight; - renderer.resize(w, h); - sim.alpha(0.3).restart(); + function setData(d) { + var nodes = (d && d.nodes) || []; + var edges = (d && d.edges) || (d && d.links) || []; + state.domains = nodes.filter(function (n) { return n.kind === 'domain'; }); + state.edges = edges; + state.domainPos = layoutDomains(state.domains, width, height); + draw(); } - window.addEventListener('resize', onResize); - - var handle = { - destroy: function () { - window.removeEventListener('resize', onResize); - sim.stop(); - renderer.destroy(); - if (panel.root && panel.root.parentNode) panel.root.parentNode.removeChild(panel.root); - }, - select: function (id) { renderer.selectId(id); }, - reflow: function () { onResize(); }, - applyFilter: function (pred) { - if (typeof renderer.applyFilter === 'function') renderer.applyFilter(pred, ctx); - }, - }; - // Expose a stable hook so the filter-bar driver can reach us. - window.JUG.wfgApplyFilter = function (pred) { handle.applyFilter(pred); }; - return handle; - } - - // ── Topology: Fibonacci-spiral domain anchors; domainOf; primary tool_hub; - // degree; adjacency; per-node slot (radial hierarchy). - function prepareTopology(nodes, edges, width, height) { - var byId = {}; - nodes.forEach(function (n) { byId[n.id] = n; }); - var domains = nodes.filter(function (n) { return n.kind === 'domain'; }); - - var cx = width / 2, cy = height / 2; - // Each domain's outer shell is roughly FILE_R + cushion; Fibonacci - // spiral average spacing is R·√(π/N). Pick baseR so the spacing - // exceeds the shell diameter — rings never collide. - var N = Math.max(domains.length, 1); - var shellDiameter = 2 * FILE_R + 60; - var baseR = Math.max( - Math.min(width, height) * 0.42, - shellDiameter * Math.sqrt(N / Math.PI) * 0.65, - ); - var phi = Math.PI * (3 - Math.sqrt(5)); // golden angle - var anchors = {}; - domains.forEach(function (d, i) { - var r = baseR * Math.sqrt((i + 0.5) / N); - var theta = i * phi; - anchors[d.id] = { x: cx + r * Math.cos(theta), y: cy + r * Math.sin(theta) }; - d.x = anchors[d.id].x; d.y = anchors[d.id].y; - d.fx = d.x; d.fy = d.y; // pin domain anchors — L1/L2/L3 rings orbit them. - }); - - var domainOf = {}; - nodes.forEach(function (n) { - if (n.kind === 'domain') { domainOf[n.id] = n.id; return; } - if (n.domain && byId[n.domain] && byId[n.domain].kind === 'domain') domainOf[n.id] = n.domain; - else if (n.domain_id && byId[n.domain_id]) domainOf[n.id] = n.domain_id; - }); - edges.forEach(function (e) { - if (e.kind !== 'in_domain') return; - var s = byId[e.source], t = byId[e.target]; - if (!s || !t) return; - if (s.kind === 'domain' && !domainOf[t.id]) domainOf[t.id] = s.id; - if (t.kind === 'domain' && !domainOf[s.id]) domainOf[s.id] = t.id; - }); - // Parent file per symbol — drives the symbol-petal clustering. - // Prefer `defined_in` edges; fall back to `path` string match. - var parentFile = {}; - edges.forEach(function (e) { - if (e.kind !== 'defined_in') return; - var s = byId[e.source], t = byId[e.target]; - if (!s || !t) return; - if (s.kind === 'symbol' && t.kind === 'file') parentFile[s.id] = t.id; - else if (t.kind === 'symbol' && s.kind === 'file') parentFile[t.id] = s.id; - }); - var filesByPath = {}; - nodes.forEach(function (n) { - if (n.kind === 'file' && n.path) filesByPath[n.path] = n.id; - }); - nodes.forEach(function (n) { - if (n.kind !== 'symbol' || parentFile[n.id]) return; - if (n.path && filesByPath[n.path]) parentFile[n.id] = filesByPath[n.path]; - }); - // Every symbol MUST have a domain or the containment force can't - // constrain it. Priority: - // 1. Parent file's domain (derived from `defined_in` edge) - // 2. node.domain_id / node.domain (server already tags each - // symbol with its project's domain id) - // 3. GLOBAL fallback if somehow neither resolves. - nodes.forEach(function (n) { - if (n.kind !== 'symbol') return; - var pf = parentFile[n.id]; - if (pf && domainOf[pf]) { domainOf[n.id] = domainOf[pf]; return; } - var did = n.domain_id || (n.domain ? 'domain:' + n.domain : ''); - if (did && byId[did]) { domainOf[n.id] = did; return; } - if (!domainOf[n.id]) domainOf[n.id] = 'domain:__global__'; - }); + // ── L0 self-load (when invoked without domain data) ── + function loadL0() { + fetch('/api/graph/phase?name=L0') + .then(function (r) { return r.ok ? r.json() : null; }) + .then(function (pl) { + if (!pl || !pl.ready || !(pl.nodes || []).length) { + setTimeout(loadL0, 600); // build not ready yet — retry + return; + } + var payload = { nodes: pl.nodes, edges: pl.edges || [], + meta: { schema: 'workflow_graph.v1' } }; + // Keep lastData populated so detail_panel.js et al. don't break. + if (window.JUG && JUG.state) JUG.state.lastData = payload; + setData(payload); + }) + .catch(function () { setTimeout(loadL0, 800); }); + } - var primaryHub = {}, hubWeight = {}; - edges.forEach(function (e) { - if (e.kind !== 'tool_used_file') return; - var s = byId[e.source], t = byId[e.target]; - if (!s || !t) return; - var hub = s.kind === 'tool_hub' ? s : (t.kind === 'tool_hub' ? t : null); - var f = s.kind === 'file' ? s : (t.kind === 'file' ? t : null); - if (!hub || !f) return; - if (domainOf[hub.id] && domainOf[hub.id] === domainOf[f.id]) { - var w = e.weight != null ? e.weight : 1; - if (!(f.id in hubWeight) || w > hubWeight[f.id]) { hubWeight[f.id] = w; primaryHub[f.id] = hub.id; } + // ── L1 expansion: fetch children, keep those belonging to domainId ── + function expandDomain(domainId) { + if (state.expanded[domainId]) { + state.expanded[domainId] = false; + draw(); + return; } - }); - - var degree = {}, adj = {}; - edges.forEach(function (e) { - degree[e.source] = (degree[e.source] || 0) + 1; - degree[e.target] = (degree[e.target] || 0) + 1; - var sd = domainOf[e.source], td = domainOf[e.target]; - e._crossDomain = !!(sd && td && sd !== td); - if (!adj[e.source]) adj[e.source] = {}; - if (!adj[e.target]) adj[e.target] = {}; - adj[e.source][e.target] = true; adj[e.target][e.source] = true; - }); - - var slotOf = computeSlots(nodes, domains, anchors, domainOf, primaryHub, parentFile, cx, cy, edges, byId); - - return { byId: byId, nodes: nodes, edges: edges, domains: domains, - anchors: anchors, domainOf: domainOf, primaryHub: primaryHub, - parentFile: parentFile, - degree: degree, adj: adj, slotOf: slotOf, - shells: SHELL_LEVELS, sideShells: [ - { key: 'L4', r: DISC_R, label: 'L4 discussions', angle: SECTOR_SIDE_ANGLE }, - { key: 'L5', r: MEM_R, label: 'L5 memories', angle: -SECTOR_SIDE_ANGLE }, - ], cx: cx, cy: cy, baseR: baseR, - width: width, height: height }; - } - - // Assign each non-domain node a target (x,y) slot expressing the hierarchy: - // domain → L1 (setup) → L2 (tools) → L3 (files); discussions lane; memories lane. - function computeSlots(nodes, domains, anchors, domainOf, primaryHub, parentFile, cx, cy, edges, byId) { - // Group non-domain nodes by (domain, kind). - var groups = {}; - for (var i = 0; i < nodes.length; i++) { - var n = nodes[i]; - if (n.kind === 'domain') continue; - var dom = domainOf[n.id]; - if (!dom || !anchors[dom]) continue; - if (!groups[dom]) groups[dom] = {}; - if (!groups[dom][n.kind]) groups[dom][n.kind] = []; - groups[dom][n.kind].push(n); + fetch('/api/graph/phase?name=L1') + .then(function (r) { return r.ok ? r.json() : null; }) + .then(function (pl) { + if (!pl) return; + var kids = (pl.nodes || []).filter(function (n) { + return belongsTo(n, domainId, pl.edges || []); + }); + state.children[domainId] = kids; + state.expanded[domainId] = true; + // Merge into lastData so other panels can resolve the nodes. + mergeLastData(kids, pl.edges || []); + draw(); + }) + .catch(function () {}); } - var slotOf = {}; - var setupKinds = ['skill', 'hook', 'command', 'agent']; - // ── Entity → linked-memory index (Gap 10 / Kekulé positioning). - // One pass over the about_entity edge set builds, per entity, - // the list of MEMORY node ids it sits on. Memories without slots - // yet (slotOf[memId] absent at this point — memories are slotted - // later in the per-domain loop) are resolved lazily in the - // second pass below by stashing entity centroids for deferred - // computation after memory slots exist. - var entityMemLinks = {}; - if (edges && edges.length) { - for (var ei = 0; ei < edges.length; ei++) { - var e = edges[ei]; - if (e.kind !== 'about_entity') continue; - var sId = typeof e.source === 'object' ? e.source.id : e.source; - var tId = typeof e.target === 'object' ? e.target.id : e.target; - var sKind = byId && byId[sId] ? byId[sId].kind : null; - var tKind = byId && byId[tId] ? byId[tId].kind : null; - var memId, entId; - if (sKind === 'memory' && tKind === 'entity') { memId = sId; entId = tId; } - else if (tKind === 'memory' && sKind === 'entity') { memId = tId; entId = sId; } - else continue; - if (!entityMemLinks[entId]) entityMemLinks[entId] = []; - entityMemLinks[entId].push(memId); + function belongsTo(node, domainId, edges) { + if (node.domain_id === domainId || node.domain === domainId) return true; + for (var i = 0; i < edges.length; i++) { + var e = edges[i]; + if (e.kind !== 'in_domain') continue; + if (e.source === node.id && e.target === domainId) return true; + if (e.target === node.id && e.source === domainId) return true; } + return false; } - Object.keys(groups).forEach(function (domId) { - var a = anchors[domId]; - var outward = Math.atan2(a.y - cy, a.x - cx); // radially outward from graph center - // For domains near the center the outward axis is unstable — bias upward. - if (Math.hypot(a.x - cx, a.y - cy) < 5) outward = -Math.PI / 2; - var g = groups[domId]; + function mergeLastData(nodes, edges) { + if (!window.JUG || !JUG.state) return; + var cur = JUG.state.lastData || { nodes: [], edges: [], + meta: { schema: 'workflow_graph.v1' } }; + var seen = {}; + (cur.nodes || []).forEach(function (n) { seen[n.id] = 1; }); + nodes.forEach(function (n) { if (!seen[n.id]) { cur.nodes.push(n); seen[n.id] = 1; } }); + cur.edges = (cur.edges || []).concat(edges); + JUG.state.lastData = cur; + } - // L2: tool_hubs at fixed per-tool angles within the setup sector. - var hubAngle = {}; - (g.tool_hub || []).forEach(function (h) { - var local = TOOL_LOCAL_ANGLE[h.tool]; - if (local == null) local = 0; - var t = outward + local; - hubAngle[h.id] = t; - slotOf[h.id] = { x: a.x + TOOL_R * Math.cos(t), - y: a.y + TOOL_R * Math.sin(t) }; + // ── Child layout: fan around the hub on a ring ── + function childPositions(domainId) { + var hub = state.domainPos[domainId]; + var kids = state.children[domainId] || []; + if (!hub || !kids.length) return []; + var ringR = CHILD_RING + Math.min(120, kids.length * 1.5); + return kids.map(function (k, i) { + var t = (i / kids.length) * Math.PI * 2; + return { + node: k, + x: hub.x + ringR * Math.cos(t), + y: hub.y + ringR * Math.sin(t), + }; }); + } - // L3: files orbit their primary tool_hub (same angle + small jitter). - var filesByHub = {}; - (g.file || []).forEach(function (f) { - var hid = primaryHub[f.id]; - if (!filesByHub[hid]) filesByHub[hid] = []; - filesByHub[hid].push(f); - }); - Object.keys(filesByHub).forEach(function (hid) { - var theta = hubAngle[hid]; - if (theta == null) theta = outward; // hub in another domain (cross-domain file) - var arr = filesByHub[hid]; - var arc = Math.min(0.35, 0.08 + arr.length * 0.015); - arr.forEach(function (f, i) { - var t = theta + ((i + 0.5) / arr.length - 0.5) * arc; - var r = FILE_R + ((i % 3) - 1) * 4; // radial stagger to reduce overlap - slotOf[f.id] = { x: a.x + r * Math.cos(t), y: a.y + r * Math.sin(t) }; - }); + // ── Rendering ── + function draw() { + ctx.clearRect(0, 0, width, height); + ctx.save(); + ctx.translate(state.panX, state.panY); + ctx.scale(state.scale, state.scale); + + drawDomainEdges(); + // Expanded children first (under hubs), then hubs on top. + Object.keys(state.expanded).forEach(function (domId) { + if (state.expanded[domId]) drawChildren(domId); }); + state.domains.forEach(drawDomain); - // L1: skills, hooks, commands, agents — fanned inner ring. - var setup = []; - setupKinds.forEach(function (k) { (g[k] || []).forEach(function (x) { setup.push(x); }); }); - if (setup.length) { - var arc1 = SECTOR_SETUP_HALF * 2; - setup.forEach(function (n, i) { - var t = outward + ((i + 0.5) / setup.length - 0.5) * arc1; - var r = SETUP_R + (i % 2) * 8; - slotOf[n.id] = { x: a.x + r * Math.cos(t), y: a.y + r * Math.sin(t) }; - }); - } + ctx.restore(); + } - // Discussions lane (opposite side from setup, one side). - var disc = g.discussion || []; - if (disc.length) { - var center = outward + SECTOR_SIDE_ANGLE; - var arc2 = SECTOR_SIDE_HALF * 2 + Math.min(Math.PI / 3, disc.length * 0.04); - disc.forEach(function (n, i) { - var t = center + ((i + 0.5) / disc.length - 0.5) * arc2; - var r = DISC_R + (i % 3) * 6; - slotOf[n.id] = { x: a.x + r * Math.cos(t), y: a.y + r * Math.sin(t) }; - }); + function drawDomainEdges() { + ctx.strokeStyle = 'rgba(120,200,220,0.10)'; + ctx.lineWidth = 1; + var seen = {}; + for (var i = 0; i < state.edges.length; i++) { + var e = state.edges[i]; + var a = state.domainPos[e.source], b = state.domainPos[e.target]; + if (!a || !b) continue; + var key = e.source < e.target ? e.source + e.target : e.target + e.source; + if (seen[key]) continue; + seen[key] = 1; + ctx.beginPath(); + ctx.moveTo(a.x, a.y); ctx.lineTo(b.x, b.y); ctx.stroke(); } + } - // Memories lane (opposite side from setup, other side). - var mem = g.memory || []; - if (mem.length) { - var center2 = outward - SECTOR_SIDE_ANGLE; - var arc3 = SECTOR_SIDE_HALF * 2 + Math.min(Math.PI / 2.5, mem.length * 0.03); - mem.forEach(function (n, i) { - var t = center2 + ((i + 0.5) / mem.length - 0.5) * arc3; - var r = MEM_R + (i % 4) * 8; - slotOf[n.id] = { x: a.x + r * Math.cos(t), y: a.y + r * Math.sin(t) }; - }); - } + function drawDomain(d) { + var p = state.domainPos[d.id]; + if (!p) return; + ctx.beginPath(); + ctx.arc(p.x, p.y, p.radius, 0, Math.PI * 2); + ctx.fillStyle = colorOf(d); + ctx.globalAlpha = state.hover === d.id ? 1 : 0.85; + ctx.fill(); + ctx.globalAlpha = 1; + ctx.lineWidth = state.expanded[d.id] ? 3 : 1.5; + ctx.strokeStyle = state.expanded[d.id] ? '#00d4ff' : 'rgba(255,255,255,0.5)'; + ctx.stroke(); + // Label. + ctx.fillStyle = '#0d1117'; + ctx.font = '600 ' + Math.max(10, Math.min(16, p.radius / 2.4)) + 'px Inter, system-ui, sans-serif'; + ctx.textAlign = 'center'; + ctx.textBaseline = 'middle'; + var lbl = labelOf(d); + if (lbl.length > 18) lbl = lbl.slice(0, 17) + '…'; + ctx.fillText(lbl, p.x, p.y); + } - // MCPs sit INSIDE the domain (between the center of the graph and the - // domain anchor), so their long INVOKED_MCP edges fan visibly between - // domains that share the MCP. - (g.mcp || []).forEach(function (n, i) { - var t = outward + Math.PI; // inward - var jitter = (i - (g.mcp.length - 1) / 2) * 0.25; - slotOf[n.id] = { x: a.x + MCP_R * Math.cos(t + jitter), - y: a.y + MCP_R * Math.sin(t + jitter) }; + function drawChildren(domId) { + var hub = state.domainPos[domId]; + if (!hub) return; + var positions = childPositions(domId); + ctx.strokeStyle = 'rgba(120,200,220,0.18)'; + ctx.lineWidth = 1; + positions.forEach(function (cp) { + ctx.beginPath(); + ctx.moveTo(hub.x, hub.y); ctx.lineTo(cp.x, cp.y); ctx.stroke(); + }); + positions.forEach(function (cp) { + ctx.beginPath(); + ctx.arc(cp.x, cp.y, CHILD_R, 0, Math.PI * 2); + ctx.fillStyle = colorOf(cp.node); + ctx.globalAlpha = state.hover === cp.node.id ? 1 : 0.9; + ctx.fill(); + ctx.globalAlpha = 1; }); + } - // L5+E entities: see ADR-0047. Slot = heat-weighted memory - // centroid blended 15% to domain hub (Kekulé valence analysis). - // Heat gate is OR-semantic by design: entity is kept if within - // top-N OR above heat threshold. `ENTITY_TOPN` therefore acts as - // a per-domain *floor* on visibility (cold domains still show - // their top-40), not a ceiling on hot ones. - var ents = (g.entity || []).slice(); - if (ents.length) { - ents.sort(function (a, b) { - return (b.heat != null ? b.heat : 0) - (a.heat != null ? a.heat : 0); - }); - var kept = ents.filter(function (en, idx) { - return idx < ENTITY_TOPN || (en.heat != null && en.heat >= ENTITY_HEAT_TAU); - }); - var hubX = a.x, hubY = a.y; - kept.forEach(function (en) { - var memIds = entityMemLinks[en.id] || []; - var cx2 = 0, cy2 = 0, wTotal = 0; - for (var mi = 0; mi < memIds.length; mi++) { - var mSlot = slotOf[memIds[mi]]; - if (!mSlot) continue; - // Heat of the memory node itself (hotter memories pull harder). - var mNode = byId ? byId[memIds[mi]] : null; - var w = mNode && mNode.heat != null ? Math.max(0.05, mNode.heat) : 0.5; - cx2 += mSlot.x * w; cy2 += mSlot.y * w; wTotal += w; - } - if (wTotal > 0) { - // Kekulé centroid blended 15% toward the domain hub. - var mcx = cx2 / wTotal, mcy = cy2 / wTotal; - slotOf[en.id] = { - x: (1 - ENTITY_DOMAIN_BLEND) * mcx + ENTITY_DOMAIN_BLEND * hubX, - y: (1 - ENTITY_DOMAIN_BLEND) * mcy + ENTITY_DOMAIN_BLEND * hubY, - }; - } else { - // Orphan: hash-deterministic ring around the domain hub so - // the same entity lands in the same place across runs. - var h = 0; - for (var ci = 0; ci < en.id.length; ci++) { - h = ((h << 5) - h + en.id.charCodeAt(ci)) | 0; - } - var theta = (Math.abs(h) % 1000) / 1000 * Math.PI * 2; - slotOf[en.id] = { - x: hubX + ENTITY_ORPHAN_R * Math.cos(theta), - y: hubY + ENTITY_ORPHAN_R * Math.sin(theta), - }; + // ── Hit testing (screen → world) ── + function toWorld(sx, sy) { + return { x: (sx - state.panX) / state.scale, y: (sy - state.panY) / state.scale }; + } + function dist2(a, b) { + var dx = a.x - b.x, dy = a.y - b.y; + return dx * dx + dy * dy; + } + function hitTest(sx, sy) { + var w = toWorld(sx, sy); + // Children of expanded domains take priority (drawn under hubs only). + var domIds = Object.keys(state.expanded); + for (var di = 0; di < domIds.length; di++) { + if (!state.expanded[domIds[di]]) continue; + var positions = childPositions(domIds[di]); + for (var ci = 0; ci < positions.length; ci++) { + var cp = positions[ci]; + if (dist2(w, cp) <= (CHILD_R + 3) * (CHILD_R + 3)) { + return { kind: 'child', node: cp.node }; } - }); - // Entities below the heat gate are intentionally slot-free — - // they'll drift to default positions and can be filter-hidden - // via the existing "kind:entity" toggle. + } } - - // L6 symbols intentionally have NO slot — their final position - // is determined by the codebase-analysis edges the force - // simulation operates on (`defined_in` pulls toward the parent - // file, `calls` pulls toward callers/callees, `imports` bridges - // files, `member_of` clusters methods with their class). The - // initial x/y seeding happens in mount() from the parent file's - // position, then the force simulation does the layout work. - }); - return slotOf; - } - - // ── Force helpers (pure closures) ── - function linkDistance(e) { - if (e._crossDomain) return CROSS_DOMAIN_DISTANCE; - return EDGE_DISTANCE[e.kind] != null ? EDGE_DISTANCE[e.kind] : 30; - } - function linkStrength(e) { - if (e._crossDomain) return CROSS_DOMAIN_STRENGTH; - var s = EDGE_STRENGTH[e.kind] != null ? EDGE_STRENGTH[e.kind] : 0.4; - return s * (e.weight != null ? Math.min(1, 0.3 + e.weight * 0.7) : 1); - } - function chargeStrength(n) { - if (n.kind === 'domain') return -620; - if (n.kind === 'tool_hub') return -140; - if (n.kind === 'agent' || n.kind === 'skill') return -80; - // Symbols: enough mutual repulsion to spread laterally in the - // interlock space (Maxwell: -22, local distanceMax). - if (n.kind === 'symbol') return -22; - return -28; - } - function slotForce(ctx, k) { - return function (alpha) { - var s = k * alpha; - for (var i = 0; i < ctx.nodes.length; i++) { - var n = ctx.nodes[i]; - if (n.kind === 'domain') continue; - var slot = ctx.slotOf[n.id]; - if (!slot) continue; - n.vx += (slot.x - n.x) * s; - n.vy += (slot.y - n.y) * s; + for (var i = 0; i < state.domains.length; i++) { + var d = state.domains[i]; + var p = state.domainPos[d.id]; + if (p && dist2(w, p) <= p.radius * p.radius) { + return { kind: 'domain', node: d }; + } } - }; - } - // Multi-centroid attraction (Alexander's deep interlock): a symbol - // is pulled by EVERY domain it touches via its edges, weighted 1/N - // where N = number of distinct domains touched. Symbols connected - // only to their home domain sit near it; cross-domain symbols - // literally fall into the interlock space between two or more hubs. - // No containment — position emerges from connectivity alone. - function symbolMultiCenterForce(ctx) { - // Precompute each symbol's domain centroid list ONCE. - var symDomains = {}; - for (var i = 0; i < ctx.nodes.length; i++) { - var n = ctx.nodes[i]; - if (n.kind !== 'symbol') continue; - var set = {}; - // Home domain (from parent file or node's own domain_id). - var home = ctx.domainOf[n.id]; - if (home && ctx.anchors[home]) set[home] = 1; - symDomains[n.id] = set; + return null; } - // Walk every AST edge; for each symbol endpoint, add the OTHER - // endpoint's domain to its centroid set. - ctx.edges.forEach(function (e) { - var k = e.kind; - if (k !== 'defined_in' && k !== 'calls' && - k !== 'imports' && k !== 'member_of') return; - var sId = typeof e.source === 'object' ? e.source.id : e.source; - var tId = typeof e.target === 'object' ? e.target.id : e.target; - var sN = ctx.byId[sId], tN = ctx.byId[tId]; - if (!sN || !tN) return; - if (sN.kind === 'symbol' && ctx.domainOf[tId] && ctx.anchors[ctx.domainOf[tId]]) { - symDomains[sId] = symDomains[sId] || {}; - symDomains[sId][ctx.domainOf[tId]] = 1; - } - if (tN.kind === 'symbol' && ctx.domainOf[sId] && ctx.anchors[ctx.domainOf[sId]]) { - symDomains[tId] = symDomains[tId] || {}; - symDomains[tId][ctx.domainOf[sId]] = 1; - } - }); - ctx._symDomains = symDomains; - return function (alpha) { - var s = 0.06 * alpha; - for (var i = 0; i < ctx.nodes.length; i++) { - var n = ctx.nodes[i]; - if (n.kind !== 'symbol') continue; - var set = symDomains[n.id]; - if (!set) continue; - var keys = Object.keys(set); - if (!keys.length) continue; - var w = s / keys.length; - for (var j = 0; j < keys.length; j++) { - var a = ctx.anchors[keys[j]]; - if (!a) continue; - n.vx += (a.x - n.x) * w; - n.vy += (a.y - n.y) * w; - } + // ── Interaction: pan, zoom, click ── + var dragging = false, dragMoved = false, lastX = 0, lastY = 0; + + function onDown(e) { + dragging = true; dragMoved = false; + lastX = e.clientX; lastY = e.clientY; + canvas.style.cursor = 'grabbing'; + } + function onMove(e) { + var rect = canvas.getBoundingClientRect(); + if (dragging) { + var dx = e.clientX - lastX, dy = e.clientY - lastY; + if (Math.abs(dx) + Math.abs(dy) > 3) dragMoved = true; + state.panX += dx; state.panY += dy; + lastX = e.clientX; lastY = e.clientY; + draw(); + return; } - }; - } - function interDomainRepelForce(ctx, k) { - return function (alpha) { - var doms = ctx.domains, strength = k * alpha * 8000; - for (var i = 0; i < doms.length; i++) { - var a = doms[i]; - for (var j = i + 1; j < doms.length; j++) { - var b = doms[j]; - var dx = b.x - a.x, dy = b.y - a.y; - var d2 = dx * dx + dy * dy + 1; - var f = strength / d2, inv = 1 / Math.sqrt(d2); - a.vx -= dx * inv * f; a.vy -= dy * inv * f; - b.vx += dx * inv * f; b.vy += dy * inv * f; + var hit = hitTest(e.clientX - rect.left, e.clientY - rect.top); + var newHover = hit ? hit.node.id : null; + if (newHover !== state.hover) { state.hover = newHover; draw(); } + canvas.style.cursor = hit ? 'pointer' : 'grab'; + } + function onUp(e) { + canvas.style.cursor = 'grab'; + if (!dragging) return; + dragging = false; + if (dragMoved) return; + var rect = canvas.getBoundingClientRect(); + var hit = hitTest(e.clientX - rect.left, e.clientY - rect.top); + if (!hit) return; + if (hit.kind === 'domain') { + expandDomain(hit.node.id); + } else if (hit.kind === 'child') { + if (window.JUG && JUG.emit) { + JUG.emit('chain:open', { id: hit.node.id, label: labelOf(hit.node) }); } } - }; - } - function collisionRadius(n, ctx) { - var base = KIND_RADIUS[n.kind] != null ? KIND_RADIUS[n.kind] : 6; - return base + Math.min(8, Math.sqrt(ctx.degree[n.id] || 0)); - } + } + function onWheel(e) { + e.preventDefault(); + var rect = canvas.getBoundingClientRect(); + var mx = e.clientX - rect.left, my = e.clientY - rect.top; + var factor = e.deltaY < 0 ? 1.12 : 1 / 1.12; + var newScale = Math.max(0.2, Math.min(6, state.scale * factor)); + // Zoom toward cursor. + state.panX = mx - (mx - state.panX) * (newScale / state.scale); + state.panY = my - (my - state.panY) * (newScale / state.scale); + state.scale = newScale; + draw(); + } + + canvas.addEventListener('mousedown', onDown); + window.addEventListener('mousemove', onMove); + window.addEventListener('mouseup', onUp); + canvas.addEventListener('wheel', onWheel, { passive: false }); + + function onResize() { resize(); } + window.addEventListener('resize', onResize); + + // Reset button (existing #reset-btn) — re-center the view. + function resetView() { + state.scale = 1; state.panX = 0; state.panY = 0; draw(); + } + var resetBtn = document.getElementById('reset-btn'); + if (resetBtn) resetBtn.addEventListener('click', resetView); - // Exposed shared utilities for renderer modules. - function nodeRadius(n) { - var base = KIND_RADIUS[n.kind] != null ? KIND_RADIUS[n.kind] : 6; - var bump = 0; - if (n.size != null) bump = Math.max(-2, Math.min(6, n.size - base)); - else if (n.weight != null) bump = Math.min(4, n.weight * 2); - return base + bump; + // Boot: render passed data, else self-load L0. + resize(); + if ((data.nodes || []).some(function (n) { return n.kind === 'domain'; })) { + setData(data); + } else { + loadL0(); + } + + return { + data: data, + destroy: function () { + window.removeEventListener('mousemove', onMove); + window.removeEventListener('mouseup', onUp); + window.removeEventListener('resize', onResize); + if (resetBtn) resetBtn.removeEventListener('click', resetView); + if (canvas.parentNode) canvas.parentNode.removeChild(canvas); + }, + select: function (id) { state.hover = id; draw(); }, + reflow: function () { resize(); }, + applyFilter: function () {}, // LOD overview has no per-node filter + }; } - function nodeColor(n) { return n.color || KIND_COLOR[n.kind] || '#50C8E0'; } - function labelOf(n) { return n.label || n.name || n.title || n.path || n.id || ''; } window.JUG = window.JUG || {}; window.JUG._wfg = window.JUG._wfg || {}; - window.JUG._wfg.nodeRadius = nodeRadius; - window.JUG._wfg.nodeColor = nodeColor; - window.JUG._wfg.labelOf = labelOf; + window.JUG._wfg.nodeColor = colorOf; + window.JUG._wfg.labelOf = labelOf; window.JUG.renderWorkflowGraph = renderWorkflowGraph; + // ``resetCamera`` / ``selectNodeById`` / ``deselectNode`` were provided by + // the removed renderer.js / graph.js. controls.js (Reset, R key) and + // detail_panel.js (related-node links, close) call them unguarded, so keep + // safe no-op defaults — the LOD canvas owns its own select/reset via hover + // state and the #reset-btn handler bound in mount(). + if (!window.JUG.resetCamera) window.JUG.resetCamera = function () {}; + if (!window.JUG.selectNodeById) window.JUG.selectNodeById = function () {}; + if (!window.JUG.deselectNode) window.JUG.deselectNode = function () {}; + + // When the graph becomes ready, prime lastData with L0 domains so the + // bridge (state:lastData → renderWorkflowGraph) mounts the overview. + if (window.JUG && JUG.on) { + JUG.on('graph:ready', function () { + var d = JUG.state && JUG.state.lastData; + if (d && (d.nodes || []).some(function (n) { return n.kind === 'domain'; })) { + return; + } + fetch('/api/graph/phase?name=L0') + .then(function (r) { return r.ok ? r.json() : null; }) + .then(function (pl) { + if (pl && pl.ready && (pl.nodes || []).length && JUG.state) { + JUG.state.lastData = { nodes: pl.nodes, edges: pl.edges || [], + meta: { schema: 'workflow_graph.v1' } }; + } + }) + .catch(function () {}); + }); + } })(); diff --git a/uv.lock b/uv.lock index 36036341..dfe0ef55 100644 --- a/uv.lock +++ b/uv.lock @@ -255,6 +255,101 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/71/cc/18245721fa7747065ab478316c7fea7c74777d07f37ae60db2e84f8172e8/beartype-0.22.9-py3-none-any.whl", hash = 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upload-time = "2025-09-14T22:18:19.088Z" }, +] From 8204aa8de33b03562d59f32c6e9aacbc93d47288 Mon Sep 17 00:00:00 2001 From: cdeust Date: Sun, 31 May 2026 11:54:56 +0200 Subject: [PATCH 02/38] =?UTF-8?q?chore:=20remove=20.memsearch=20=E2=80=94?= =?UTF-8?q?=20Cortex=20is=20the=20single=20memory=20solution?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Deleted all .memsearch/ files (index pid + 4 daily memory snapshots) and added .memsearch/ to .gitignore. No other memory plugin is planned; Cortex handles all persistent memory via PostgreSQL + pgvector. Co-Authored-By: Claude Sonnet 4.6 --- .gitignore | 2 + .memsearch/.index.pid | 1 - .memsearch/memory/2026-05-27.md | 60 ------- .memsearch/memory/2026-05-28.md | 148 ----------------- .memsearch/memory/2026-05-29.md | 270 -------------------------------- .memsearch/memory/2026-05-31.md | 3 - 6 files changed, 2 insertions(+), 482 deletions(-) delete mode 100644 .memsearch/.index.pid delete mode 100644 .memsearch/memory/2026-05-27.md delete mode 100644 .memsearch/memory/2026-05-28.md delete mode 100644 .memsearch/memory/2026-05-29.md delete mode 100644 .memsearch/memory/2026-05-31.md diff --git a/.gitignore b/.gitignore index da234514..4ccbf47d 100644 --- a/.gitignore +++ b/.gitignore @@ -34,3 +34,5 @@ traces/ .claude/scheduled_tasks.lock .claude/session-cache.json benchmarks/snapshots/ +.memsearch/ + diff --git a/.memsearch/.index.pid b/.memsearch/.index.pid deleted file mode 100644 index 9bbdaa5b..00000000 --- a/.memsearch/.index.pid +++ /dev/null @@ -1 +0,0 @@ -51120 diff --git a/.memsearch/memory/2026-05-27.md b/.memsearch/memory/2026-05-27.md deleted file mode 100644 index 06f15275..00000000 --- a/.memsearch/memory/2026-05-27.md +++ /dev/null @@ -1,60 +0,0 @@ - -## Session 15:49 - -### 15:49 - -- User reported being unable to run commands due to network restrictions in Geneva; Claude Code attempted to probe login shell for PyPI credentials but was blocked by a guardrail that classified it as credential exploration. - -- Claude Code investigated the actual publishing situation and discovered PyPI publishing was deliberately removed on 2026-04-25 (ADR-0050), with Cortex using marketplace-only distribution; the real gap was that v3.17.1 shipped the security fix code but marketplace.json still advertised version 3.17.0, preventing update prompts. - -- Claude Code bumped `.claude-plugin/marketplace.json` (both version fields) and `pyproject.toml` from 3.17.1 to 3.17.2, committed as `e5d2e16`, and pushed to main. - -- Claude Code created and pushed tag v3.17.2, manually created a GitHub Release to trigger the marketplace publish workflow immediately, and verified the `publish-ccplugins.yml` run (26515060666) succeeded in 10s—the security fix is now advertised to the marketplace. - -- Claude Code restored the removed `build` and `publish-pypi` jobs into `release.yml` as a deprecated channel (reusing the existing OIDC trusted-publisher entry), updated README.md to clarify marketplace as the only supported path, closed PR #48, and committed as `9c9b659`. - -- Final state: main at `9c9b659`, marketplace advertises 3.17.2, security fix delivered via supported channel, PyPI reinstated as deprecated for next releases, no PyPI web-UI reconfiguration required. - - -## Session 15:55 - -### 15:55 - -- User requested Claude Code to credit the advisory and close it. -- Claude Code checked advisory GHSA-gvpp-v77h-5w8g state and found EQSTLab already credited+accepted as reporter, advisory published since 2026-05-27T12:12:49Z, CVE ID null. -- Claude Code clarified that "close" for a published advisory could mean withdraw (destructive) or request CVE (finalization), and asked user for disambiguation. -- User chose to request CVE while keeping the advisory published. -- Claude Code issued POST request to `/repos/cdeust/Cortex/security-advisories/GHSA-gvpp-v77h-5w8g/requests_for_cve` (202 Accepted); verified final state shows advisory published, EQSTLab credited, CVE request queued (async assignment pending). -- Claude Code summarized complete security work: fix merged (5d22091), v3.17.2 shipped, PyPI reinstated as deprecated, sibling repos audited clean. - - -## Session 16:53 - -### 16:53 - -- User requested that Claude Code clean up WIP branches to reduce clutter. -- Claude Code surveyed all branches and stashes, identified 4 unmerged local branches, checked PR merge status via git diff, and confirmed which were safe to delete. -- Claude Code deleted two merged branches (`security/ghsa-gvpp-v77h-5w8g` via PR #47, `fix/mcp-remember-recall-schemas` via PR #45) locally and remotely, and pruned stale remote refs. -- Claude Code characterized the two remaining WIP branches (`wip/layout-authority-sse-streaming` with 1 commit on graph-load streaming, `wip/conversational-theme-recall` with 5 commits on theme-grounded recall) and asked user whether to keep or delete each. -- User chose to keep `wip/layout-authority-sse-streaming` and delete `wip/conversational-theme-recall`; Claude Code deleted the latter locally and remotely. -- Claude Code dropped 3 junk stashes tied to now-deleted branches and merged PRs, preserved 2 stashes related to the layout-authority work, and left 2 large orphaned stashes untouched. - - -## Session 17:42 - -### 17:41 - -- User requested that Claude Code rebase the `wip/layout-authority-sse-streaming` branch onto main (122 commits behind) to enable a clean PR without losing the SSE/layout-authority work being modified. - -- Claude Code backed up the branch, applied two stashes (streaming refactor + cochrane doc, frontend bits), removed vendored `deps/` junk, squashed to one commit, and rebased onto main, resolving 3 conflicts in `http_standalone.py`, `polling.js`, and `unified-viz.html` by keeping both old and new route logic. - -- Verified rebase success: branch now 0 behind main with 2 commits, security fix intact, streaming work wired, all imports OK, 26/26 layout-authority tests pass. - -- Launched viz server to measure SSE streaming performance and discovered three bugs: (1) build never reached `baseline_ready` because `__global__` domain node was excluded from batches due to offset captured after `_ensure_domain`, (2) `_observe_pressure()` was O(N×files) summing `pending_symbols` on every emit (86k-edge batch pinned CPU for minutes), (3) native AST parse ran synchronously before streaming started. - -- Fixed all three bugs: moved offset capture before `_ensure_domain`, replaced `sum()` with O(1) counter (90k emits now 0.23s), deferred native AST parse in streaming mode; committed as `6283f3e`. - -- After fixes, graph completes and shows cleanly (135k–138k nodes, 166k–169k edges), but first-paint is ~100s on the large DB due to synchronous load/ingest of baseline (107k memories, 86k edges, 22k entities) before streaming begins; identified skeleton-first staging as the focused path to sub-second first-paint. - -- Branch is PR-ready; Claude Code asked user whether to push PR now or wire skeleton-first staging first. - diff --git a/.memsearch/memory/2026-05-28.md b/.memsearch/memory/2026-05-28.md deleted file mode 100644 index 1e546283..00000000 --- a/.memsearch/memory/2026-05-28.md +++ /dev/null @@ -1,148 +0,0 @@ - -## Session 09:22 - -### 09:22 - -- Human asked Claude Code to continue implementing skeleton-first staging to achieve sub-second first-paint for the graph visualization. -- Claude Code identified the root cause: the build progress callback was missing after `builder.build()`, causing the phase message to stick at the last source-loaded update (memory_entity_edges) while the full build ground on 107k memories. -- Claude Code implemented two-stage graph building by modifying `http_standalone_graph.py` to call `build_workflow_graph()` with stage="skeleton" first (≪1s, domains + setup only), then stage="full" for the complete build; updated `http_standalone_endpoints.py` to expose both stages. -- Claude Code verified that `appendGraphDelta()` in `unified-viz.html` deduplicates by node/edge ID, allowing safe dual fetches; updated the HTML fallback to render on both `baseline_ready` (skeleton) and `full_ready` (full) events. -- Claude Code launched the server, measured performance (baseline_ready=True at t=0s with 86 skeleton nodes), captured a headless Chrome screenshot, and verified the skeleton graph renders at first paint (~1s), then the full graph fills in as the build progresses in background (elapsed=92s). -- Claude Code committed across 5 files (workflow_graph.py, http_standalone.py, http_standalone_endpoints.py, http_standalone_graph.py, unified-viz.html) as commit `c672c05` with message "feat(viz): skeleton-first baseline so /cortex-visualize paints in ~1 s"; branch now 3 commits ahead of main with 0 behind and 26/26 layout tests passing. - - -## Session 09:26 - -### 09:26 - -- User invoked the `/cortex-visualize` skill to launch an interactive neural graph visualization. -- Claude Code killed the dev server, synced 55 cache roots from the dev branch (commit c672c05), and called `mcp__plugin_cortex_cortex__open_visualization()` to bootstrap the visualization server on port 3458. -- Claude Code probed the running servers and confirmed the skeleton-first baseline is working: `baseline_ready=True` in ~4 seconds with 86 skeleton nodes (domains + skills + hooks), with the full graph continuing to build in the background. -- Claude Code took a live screenshot of the plugin visualization server showing the current build state (elapsed=42s on memory_entity_edges phase) and graph cache (86 nodes/170 edges). -- Claude Code explained the rendering workflow: phase poller triggers build, skeleton renders in ~4s via `/api/graph` fallback, full graph (135k nodes) appends as build completes, with deduplication by node/edge ID. -- Branch `wip/layout-authority-sse-streaming` is confirmed PR-ready with 3 commits, all 26 layout-authority tests passing, and skeleton-first visualization working as designed. - - -## Session 09:44 - -### 09:44 - -- Human pointed out that Claude Code is showing the wrong visualization; the README displays a force-directed neural graph, not the current tilemap view. -- Claude Code searched the README for image references, identified `cortex-workflow-graph.png`, and discovered that `?viz=force` URL parameter and clicking the Graph tab control the force-directed view selector. -- Claude Code attempted multiple Chrome DevTools Protocol (CDP) driven screenshots; initial attempts failed because the dev server on port 3458 was no longer running; Claude Code relaunched the server. -- Claude Code successfully drove headless Chrome to navigate to `http://127.0.0.1:3458/?viz=force`, clicked the Graph button to set `activeView='graph'`, and captured a 674KB screenshot showing the force-directed workflow graph with 86 skeleton nodes and 170 edges. -- Claude Code verified the skeleton-first staging is working: `baseline_ready=True` within ~1s, full build continues in background with phase-polling at `memory_entity_edges`, and delivered the screenshot to the user with explanation of the complete visualization flow. - - -## Session 09:51 - -### 09:51 - -- User reported that the graph takes "ages to load," contradicting Claude Code's stated "200ms" latency claim. -- Claude Code identified two root causes: the handler was hardcoding `?viz=tilemap` (Datashader tile renderer, no skeleton-first fixes) instead of `?viz=force` (force-directed view with skeleton-first optimization), and the schema description misleadingly described handler-call latency rather than graph-build time. -- Claude Code modified `mcp_server/handlers/open_visualization.py` to change the default URL from `?viz=tilemap` to `?viz=force` and clarified the schema description to distinguish between handler warmup (~200ms) and DB-dependent graph build time (skeleton ~1s, full ~1-3 min). -- Claude Code updated `tests_py/handlers/test_open_visualization.py` to expect `?viz=force` in assertions (5 substitutions: URL checks and test docstring) and fixed a failing test assertion that checked for "tilemap" in the message by updating it to expect "Workflow graph" instead. -- Claude Code verified all 11 tests pass and committed as `8b2188f fix(viz): default /cortex-visualize to ?viz=force (the README hero view)`. -- Branch `wip/layout-authority-sse-streaming` is now 4 commits ahead of main with the correct default visualization endpoint. - - -## Session 10:05 - -### 10:05 - -- User requested a protocol to load graph data in 200ms instead of 45 minutes, emphasizing this was the original ask and previous work was tangential. -- Claude Code designed and implemented a CXGB binary snapshot protocol: fixed-width node/edge rows with deduplicated string pool (6.88 MB for 135k/166k) serializing in 279ms and deserializing in 310ms. -- Claude Code created `graph_snapshot.py` with binary format, added `/api/graph.bin` endpoint, integrated snapshot writer into build completion at both skeleton stage (~2s) and full stage, created `graph_snapshot.js` client decoder, and updated HTML to try binary path first with JSON fallback. -- Initial server launch showed full build took >270s without completing; Claude Code identified snapshot was only written after full merge, modified code to write skeleton snapshot immediately after skeleton merge stage instead. -- Measured performance on live server: `/api/graph.bin` (binary skeleton) = 0.8–1.7ms vs `/api/graph` (JSON) = 4.3ms, with skeleton snapshot appearing within ~2s (170× under 200ms target); full snapshot projected at ~110ms when background build completes. -- Claude Code committed across 6 files (graph_snapshot.py, http_standalone.py, http_standalone_endpoints.py, http_standalone_graph.py, unified-viz.html, graph_snapshot.js) in commit `0204da8`; branch now 5 commits ahead of main and PR-ready. - - -## Session 10:50 - -### 10:50 - -- User requested live streaming of graph visualization on first page visit instead of blocking until the full build completes, so nodes appear as files are processed. -- Claude Code created `graph_event_stream.py` for SSE event buffering and replay, wired `on_batch` callback in `http_standalone_graph.py`, added `/api/graph/events` endpoint in `http_standalone_endpoints.py`, and created frontend `graph_event_stream.js` subscriber with EventSource integration in `unified-viz.html`. -- Claude Code discovered the real bottleneck: `build_workflow_graph` loaded all PostgreSQL sources before emitting any events, causing ~100s latency before first visual update; restructured the function to interleave load+ingest+emit per source instead. -- Claude Code measured the final result: first SSE batch arrives at t=0.00s with 1,077 structural nodes (skills, hooks, agents, commands, discussions); full graph of 26,267 nodes streams in by t=25s; skeleton binary snapshot loads in 0.8–1.7 ms on subsequent visits. -- All 37 existing tests pass; Claude Code committed across 2 commits (`d9d8a98` for SSE infrastructure, `972bb9a` for interleaved load+ingest+emit), bringing branch to 7 commits ahead of main and PR-ready. - - -## Session 10:54 - -### 10:54 - -- Human asked where the visualization is, noting they haven't seen any output yet. -- Claude Code killed lingering dev servers (ports 3458, 60803), verified latest branch state (commit 972bb9a), dropped old skeleton snapshot, and invoked `open_visualization()` which returned `http://127.0.0.1:50408/?viz=tilemap`. -- Claude Code ran bash commands to verify both servers have latest endpoints; confirmed `/api/graph/events` and `/api/graph.bin` return HTTP 200, and build is actively running with skeleton snapshot (`base=True`, `phase='loading discussion_commands'`). -- Claude Code identified that the MCP handler is cached from session start and emits old `?viz=tilemap` URL, though the running server code IS the latest (commit 972bb9a) with working live-stream and snapshot paths. -- Claude Code offered two remedies: Option A—change URL bar from `?viz=tilemap` to `?viz=force`, or Option B—click the Graph tab in the toolbar; also noted restarting Claude Code would pick up new handler default but server-side features are already active. - - -## Session 11:07 - -### 11:07 - -- User reported that the graph visualization shows a progress bar but nodes never actualize while streaming. -- Claude Code traced the root cause: the `_startLiveStream` listener registration was running inline in the HTML `` before `state.js` and `graph_event_stream.js` loaded, so `JUG.on` didn't exist when the code tried to register the event listener. -- Claude Code fixed the issue by moving the live-stream listener registration to a ` + + + + + + + diff --git a/ui/clinical/js/api.js b/ui/clinical/js/api.js new file mode 100644 index 00000000..fd7c3891 --- /dev/null +++ b/ui/clinical/js/api.js @@ -0,0 +1,114 @@ +/** + * api.js — Fetch wrappers for every server endpoint. + * + * Every function returns a Promise. + * Every error is surfaced via state.reportError(); no silent failures. + * Callers may also attach .catch() but the status-bar message is guaranteed. + */ + +import { reportError } from "./state.js"; + +const BASE = ""; // same-origin; no trailing slash + +/** + * Shared JSON fetch helper. All errors are reported to state. + * @param {string} url + * @param {string} [label] — human-readable label for error messages + * @returns {Promise<*>} + */ +async function _jsonFetch(url, label) { + const res = await fetch(BASE + url).catch(err => { + const msg = `${label || url}: network error — ${err.message}`; + reportError(msg); + throw new Error(msg); + }); + if (!res.ok) { + const msg = `${label || url}: HTTP ${res.status}`; + reportError(msg); + throw new Error(msg); + } + return res.json().catch(err => { + const msg = `${label || url}: JSON parse error — ${err.message}`; + reportError(msg); + throw new Error(msg); + }); +} + +/** + * GET /api/graph/progress + * @returns {Promise<{phase:string, pct:number, phases:Object, full_ready:boolean, message:string, elapsed:number}>} + */ +export function fetchProgress() { + return _jsonFetch("/api/graph/progress", "graph/progress"); +} + +/** + * GET /api/graph/phase?name= + * @param {string} key + * @returns {Promise<{nodes:Array, edges:Array, ready:boolean, node_total:number, edge_total:number, phase:string, deps:Array}>} + */ +export function fetchPhase(key) { + return _jsonFetch( + `/api/graph/phase?name=${encodeURIComponent(key)}`, + `graph/phase:${key}` + ); +} + +/** + * GET /api/quadtree + * Returns the Apache Arrow IPC response as an ArrayBuffer, or null on 503. + * Caller is responsible for parsing Arrow IPC. + * @returns {Promise} + */ +export async function fetchQuadtree() { + const res = await fetch(BASE + "/api/quadtree").catch(err => { + reportError(`quadtree: network error — ${err.message}`); + throw err; + }); + if (res.status === 503) { + // Not-ready is expected on cold start — not an error. + return null; + } + if (!res.ok) { + const msg = `quadtree: HTTP ${res.status}`; + reportError(msg); + throw new Error(msg); + } + return res.arrayBuffer().catch(err => { + const msg = `quadtree: buffer read error — ${err.message}`; + reportError(msg); + throw new Error(msg); + }); +} + +/** + * GET /api/recompute_layout (fire-and-forget; best-effort) + * Initiates DrL layout computation. Errors are warnings only. + * @returns {Promise} + */ +export async function triggerLayoutRecompute() { + fetch(BASE + "/api/recompute_layout").catch(err => { + console.warn("[api] recompute_layout error (non-fatal):", err.message); + }); +} + +/** + * GET /api/graph/chain?id=