basic.py

#!/usr/bin/env python3

#                             The MIT License
#
#  This file is part of QuickEd library.
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from quicked import QuickedAligner, QuickedException

pattern = "ACGT" # Pattern sequence
text = "ACTT"    # Text sequence
score = -1       # Alignment score
cigar = ""       # CIGAR string

try:
    aligner = QuickedAligner()    # Aligner object, with sensible default parameters
    # Without any extra configuration, the aligner will use the Quicked algorithm

    aligner.align(pattern, text)  # Align the sequences!

    score = aligner.getScore()    # Get the score
    cigar = aligner.getCigar()    # Get the CIGAR string
except QuickedException as e:
    print(e)

print(f"Score: {score}") # Print the score
print(f"Cigar: {cigar}") # Print the CIGAR string