Instance and trace parameters for CirqApplication

[msoeken]

This allows to pass all parameters to trace_from_cirq from a CirqApplication. Before this was only possible for classical_control_probability.

classical_control_probability is an instance parameter, as well as rotation_threshold. The remaining parameter track_memory_qubits is a hyper parameter for resource estimation exploration.

For now track_memory_qubits only iterates of [True], thereby not changing any of the current resource estimation tasks. We need better control of the trace such that we can skip enumerating over both truth values in case there are no memory qubits in the input circuit. To enable passing False or both values one can call .q on the app and extend the trace query, e.g.:

app = CirqApplication(circuit, classical_control_probability=..., rotation_threshold=...)
trace_query = app.q(track_memory_qubits=[True, False]) * PSSPC.q() * ...

[brad-lackey]

Is this sufficient? I would think this should be tied to the rotation synthesis error rate (although that is computed lower in the stack).