DataSources.md

Data Sources

Developmental Heart Data:

Asp et al. 2019, Cell

Images

Other Data

Mouse Hippocampus:

Qian et al. 2020, Nature Methods

Images

Other Data

Notes

For hippocampus, images/spot were downloaded directly. The single cell data was opened in MATLAB using their repo. Each field of the GeneSet object was saved seperately and reloaded via a Jupyter notebook into an AnnData object. There were duplicate observation and variable names. The observations were made unique via obs_names_make_unique() from AnnData. None of the duplicate genes (AnnData.var) appeared in the spatial data, so they were also made unique in the same way.

Fetal Liver/Hemapoietic Stem Cells:

Lu et al. 2021, Cell Discovery

Data

Misc

For testing purposes a small, cropped section of the developmental heart data (PCW4.5_1) was occasionally used