diff --git a/src/methods_transcript_assignment/comseg/script.py b/src/methods_transcript_assignment/comseg/script.py index 22247919..fca7cadb 100644 --- a/src/methods_transcript_assignment/comseg/script.py +++ b/src/methods_transcript_assignment/comseg/script.py @@ -43,6 +43,7 @@ "write_cells_centroids": True, "patch_width": par["transcript_patch_width"], "prior_shapes_key": "segmentation_boundaries", + "points_key": par["transcripts_key"], } sopa.make_transcript_patches(**transcript_patch_args)