From 9687035549533cdd475b1ebece204bcee2b1a6b4 Mon Sep 17 00:00:00 2001 From: LouisK92 Date: Wed, 10 Dec 2025 13:42:02 +0100 Subject: [PATCH] Adjust anndata version for gene eff correction and qc filter --- .../gene_efficiency_correction/config.vsh.yaml | 3 +++ src/methods_qc_filter/basic_qc_filter/config.vsh.yaml | 3 +++ 2 files changed, 6 insertions(+) diff --git a/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml b/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml index 1e8604c82..9fffd2c8f 100644 --- a/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml +++ b/src/methods_expression_correction/gene_efficiency_correction/config.vsh.yaml @@ -29,6 +29,9 @@ engines: image: openproblems/base_python:1 __merge__: - /src/base/setup_txsim_partial.yaml + setup: + - type: python + pypi: ["anndata>=0.12.0"] - type: native runners: diff --git a/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml b/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml index e157f553f..fca3c2bd6 100644 --- a/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml +++ b/src/methods_qc_filter/basic_qc_filter/config.vsh.yaml @@ -31,6 +31,9 @@ engines: image: openproblems/base_python:1 __merge__: - /src/base/setup_txsim_partial.yaml + setup: + - type: python + pypi: ["anndata>=0.12.0"] - type: native runners: