Errors when using make

[ken0414]

CMake version is 3.22.1
GNU Make version is 4.3
CMake is running without using CUDA

Errors occured when using command 'make'

kenmarnuls@LAPTOP-Q547HOJF:~/CCMpred$ make
[ 7%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad.c.o
In file included from /home/kenmarnuls/CCMpred/lib/libconjugrad/src/conjugrad.c:4:
/home/kenmarnuls/CCMpred/lib/libconjugrad/include/conjugrad.h:21:15: error: conflicting types for ‘sqrtf’; have ‘float(double)’
21 | #define fsqrt sqrtf
| ^~~~~
In file included from /home/kenmarnuls/CCMpred/lib/libconjugrad/src/conjugrad.c:4:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:143:1: note: previous declaration of ‘sqrtf’ with type ‘float(float)’
143 | __MATHCALL (sqrt,, (Mdouble __x));
| ^~~~~~~~~~
make[2]: *** [lib/libconjugrad/CMakeFiles/conjugrad.dir/build.make:76：lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad.c.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:129：lib/libconjugrad/CMakeFiles/conjugrad.dir/all] Error 2
make: *** [Makefile:156：all] Error 2

Can this problem be solved by modifying the code?

[ken0414]

Hello, my issue is solved, the program was succesfully generated, but there is an another problem when im running CCMpred.

line 4: 240 Segmentation fault

How does it happend? Is there something wrong with my Ubuntu system. Im using the CPU version.

[ken0414]

Here is the output

(base) kenmarnuls@LAPTOP-Q547HOJF:~/code/SPOT-Contact-Helical-New/inputs$ ccmpred tmp.aln tmp.mat

---

| | | |___ ___ ___ | |
| --| --| | | | . | | -| . |
|||||| || |||
|_|

using CPU (1 thread(s))

Reweighted 3971 sequences with threshold 0.8 to Beff=370.517 weight mean=0.0933057, min=0.000383877, max=1
Segmentation fault

[Benny0323]

CMake version is 3.22.1 GNU Make version is 4.3 CMake is running without using CUDA

Errors occured when using command 'make'

kenmarnuls@LAPTOP-Q547HOJF:~/CCMpred$ make [ 7%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad.c.o In file included from /home/kenmarnuls/CCMpred/lib/libconjugrad/src/conjugrad.c:4: /home/kenmarnuls/CCMpred/lib/libconjugrad/include/conjugrad.h:21:15: error: conflicting types for ‘sqrtf’; have ‘float(double)’ 21 | #define fsqrt sqrtf | ^~~~~ In file included from /home/kenmarnuls/CCMpred/lib/libconjugrad/src/conjugrad.c:4: /usr/include/x86_64-linux-gnu/bits/mathcalls.h:143:1: note: previous declaration of ‘sqrtf’ with type ‘float(float)’ 143 | __MATHCALL (sqrt,, (Mdouble __x)); | ^~~~~~~~~~ make[2]: *** [lib/libconjugrad/CMakeFiles/conjugrad.dir/build.make:76：lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad.c.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:129：lib/libconjugrad/CMakeFiles/conjugrad.dir/all] Error 2 make: *** [Makefile:156：all] Error 2

Can this problem be solved by modifying the code?

Hi!
Could you tell me how to solve this problem. Unluckily, I met it too!
Thanks!

[lm-jkominek]

Hi, not sure if you still care, but I also stumbled upon this problem. What worked for me was opening the file "include/conjugrad.h" and simply commenting out the offending line by adding // in front of it.