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3 followers · 15 following
  • Carlos III Health Institute
  • Madrid, Spain

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Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: Quickdraw

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Aberdur/README.md

Hi, I'm Alejandro Bernabeu

Bioinformatician at BU-ISCIII with a strong focus on backend development, data platforms and reproducible workflows

Alejandro Bernabeu

  • I currently work as a bioinformatician at BU-ISCIII, contributing to data platforms and backend services for genomic and public health workflows.
  • My day-to-day work combines Python development, metadata validation, data ingestion pipelines, Linux operations and collaborative software delivery.
  • I am especially interested in secure data access, reproducible analysis pipelines and maintainable tooling for research environments.

Current work

  • Go-IMPaCT: backend and infrastructure work around LocalEGA and Beacon v2.
  • RELECOV: Python modules for ingestion, transformation and schema-based validation of surveillance datasets.
  • Internal tooling focused on robustness, reproducibility and developer-friendly automation.

Languages and tools

skills

pandas numpy JSON Schema CI/CD Plotly Matplotlib ETL data validation CLI tooling

What I work on

  • Backend processing modules for automated ingestion, transformation and validation of scientific datasets.
  • Containerised services deployed in Linux environments, including configuration and operational setup.
  • SQL and NoSQL data layers with PostgreSQL, MySQL and MongoDB.
  • Reproducible analysis pipelines and reporting outputs for bioinformatics and surveillance data.

Languages

  • Spanish: native
  • English: C1

Contact

GitHub stats

GitHub stats

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  1. buisciii-tools buisciii-tools Public

    Forked from BU-ISCIII/buisciii-tools

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 1

  2. LocalEGA LocalEGA Public

    Forked from BU-ISCIII/LocalEGA

    A federated storage for sensitive data

    Python

  3. relecov-platform relecov-platform Public

    Forked from BU-ISCIII/relecov-platform

    genomic surveillance web platform for respiratory viruses used by RELECOV network in Spain

    Python

  4. relecov-tools relecov-tools Public

    Forked from BU-ISCIII/relecov-tools

    set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload t…

    HTML

  5. nf-core/viralrecon nf-core/viralrecon Public

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 160 147

  6. nf-core/test-datasets nf-core/test-datasets Public

    Test data to be used for automated testing with the nf-core pipelines

    155 484