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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 29 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 27 9

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 16 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 563 repositories
  • aind-proteomics-annotator-gui Public

    GUI for annotating proteomics datasets

    AllenNeuralDynamics/aind-proteomics-annotator-gui’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 19, 2026
  • zombie Public
    AllenNeuralDynamics/zombie’s past year of commit activity
    Python 0 MIT 0 9 0 Updated Feb 19, 2026
  • neuron-fragment-extractor Public

    FragmentExtractor is a Python tool for generate data to train machine learning models that correct split and merge errors in neuron segmentations.

    AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 19, 2026
  • zombie-squirrel Public

    Caching tools for storing expensive DocDB queries and S3 data tables in Redshift

    AllenNeuralDynamics/zombie-squirrel’s past year of commit activity
    Python 0 MIT 0 2 2 Updated Feb 19, 2026
  • aind-exaSPIM-pipeline-utils Public

    ExaSPIM pipeline components primarily to be installed in Code Ocean capsules

    AllenNeuralDynamics/aind-exaSPIM-pipeline-utils’s past year of commit activity
    Python 1 MIT 1 7 1 Updated Feb 19, 2026
  • aind-SmartSPIM-segmentation Public

    segmentation module for SmartSPIM cloud pipeline

    AllenNeuralDynamics/aind-SmartSPIM-segmentation’s past year of commit activity
    Python 2 MIT 1 2 0 Updated Feb 19, 2026
  • neuroglancer-chat Public

    An agent interface for neuroglancer. Navigate and annotate brain imaging data with natural language

    AllenNeuralDynamics/neuroglancer-chat’s past year of commit activity
    Python 1 MIT 0 4 2 Updated Feb 19, 2026
  • Aind.Behavior.Gists Public

    A repository with a bunch of unorganized gists

    AllenNeuralDynamics/Aind.Behavior.Gists’s past year of commit activity
    Python 0 0 0 0 Updated Feb 19, 2026
  • Aind.Behavior.Telekinesis Public

    Task implemention of brain-computer interface experiments

    AllenNeuralDynamics/Aind.Behavior.Telekinesis’s past year of commit activity
    C# 0 MIT 1 3 1 Updated Feb 19, 2026
  • nmcp-api Public
    AllenNeuralDynamics/nmcp-api’s past year of commit activity
    TypeScript 0 0 0 0 Updated Feb 19, 2026

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