Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- dynamic-foraging-task Public
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity - neuron-fragment-extractor Public
FragmentExtractor is a Python tool for generate data to train machine learning models that correct split and merge errors in neuron segmentations.
AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity - zombie-squirrel Public
Caching tools for storing expensive DocDB queries and S3 data tables in Redshift
AllenNeuralDynamics/zombie-squirrel’s past year of commit activity - aind-exaSPIM-pipeline-utils Public
ExaSPIM pipeline components primarily to be installed in Code Ocean capsules
AllenNeuralDynamics/aind-exaSPIM-pipeline-utils’s past year of commit activity - neuroglancer-chat Public
An agent interface for neuroglancer. Navigate and annotate brain imaging data with natural language
AllenNeuralDynamics/neuroglancer-chat’s past year of commit activity
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