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Add pymatgen, mdtraj, and ob-energy#18

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ghutchis wants to merge 1 commit intomasterfrom
add-more-plugins
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Add pymatgen, mdtraj, and ob-energy#18
ghutchis wants to merge 1 commit intomasterfrom
add-more-plugins

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Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
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