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Merged
kwabenantim merged 17 commits into from
May 22, 2026
Merged

Custom Ubuntu base #101

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8ebef23
#98 Add base arg to custom images
kwabenantim Apr 30, 2026
8936d77
Merge branch 'main' into 98-custom-ubuntu-base
kwabenantim May 19, 2026
0138453
#98 Add links to patch sources
kwabenantim May 19, 2026
a183513
#98 Split os setup script by lts
kwabenantim May 19, 2026
ee554ea
#98 Simplify patch paths
kwabenantim May 19, 2026
ca3bffe
#98 Change default base to resolute
kwabenantim May 19, 2026
7460532
#98 Add Ubuntu LTS versions to build workflows
kwabenantim May 19, 2026
feb87ee
#98 Update build workflows
kwabenantim May 19, 2026
4252836
#98 Use bash everywhere
kwabenantim May 19, 2026
7d137cc
#98 Update resolute custom versions
kwabenantim May 19, 2026
6511eb0
#98 Simplify common.sh
kwabenantim May 20, 2026
16d911c
#98 Install python-is-python3
kwabenantim May 20, 2026
4bee625
#98 Update noble custom versions
kwabenantim May 20, 2026
ae1aea2
#98 Restrict custom docker to LTS
kwabenantim May 20, 2026
84f4811
#98 Fix relative script directories
kwabenantim May 21, 2026
0ca656e
#98 Let setup scripts fail with error
kwabenantim May 21, 2026
931dd6d
#98 Fix Dockerfile script links
kwabenantim May 21, 2026
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20 changes: 18 additions & 2 deletions .github/workflows/build-all.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,16 @@ name: Build all
on:
workflow_dispatch:
inputs:
ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

boost_ver:
description: "Boost version"
required: true
Expand Down Expand Up @@ -63,7 +73,13 @@ jobs:
setup:
name: Build all dependencies

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +76 to +80
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -89,7 +105,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
20 changes: 18 additions & 2 deletions .github/workflows/build-boost.yml
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Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "1.83.0"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build Boost ${{ github.event.inputs.boost_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,7 +47,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
20 changes: 18 additions & 2 deletions .github/workflows/build-hdf5.yml
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Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "1.10.10"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build HDF5 ${{github.event.inputs.hdf5_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,7 +47,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
20 changes: 18 additions & 2 deletions .github/workflows/build-petsc.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,16 @@ on:
- "linux-gnu-opt"
default: "linux-gnu"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -27,7 +37,13 @@ jobs:
setup:
name: Build PETSc ${{ github.event.inputs.petsc_ver }}/${{github.event.inputs.petsc_arch }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +40 to +44
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -41,7 +57,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
22 changes: 19 additions & 3 deletions .github/workflows/build-sundials.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "6.4.1"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build SUNDIALS ${{ github.event.inputs.sundials_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,8 +47,8 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh && \
sudo apt-get install -y mpi-default-bin mpi-default-dev
./setup_custom.sh && \
apt-get install -y mpi-default-bin mpi-default-dev

- name: List environment modules
run: |
Expand Down
22 changes: 19 additions & 3 deletions .github/workflows/build-vtk.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "9.1.0"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build VTK ${{ github.event.inputs.vtk_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,8 +47,8 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh && \
sudo apt-get install -y libboost-dev mpi-default-bin mpi-default-dev
./setup_custom.sh && \
apt-get install -y libboost-dev mpi-default-bin mpi-default-dev

- name: List environment modules
run: |
Expand Down
20 changes: 18 additions & 2 deletions .github/workflows/build-xercesc.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "3.2.4"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build Xerces-C ${{ github.event.inputs.xercesc_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,7 +47,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
20 changes: 18 additions & 2 deletions .github/workflows/build-xsd.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "4.0.0"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

defaults:
run:
shell: bash --login -e -o pipefail {0} # login for environment modules
Expand All @@ -18,7 +28,13 @@ jobs:
setup:
name: Build XSD ${{ github.event.inputs.xsd_ver }}

runs-on: ubuntu-22.04
runs-on: ubuntu-latest

container:
image: "ubuntu:${{ github.event.inputs.ubuntu_codename }}"
env:
Comment on lines +31 to +35
RUNNER_OFF: 1
options: --user 0

steps:
- name: Checkout
Expand All @@ -31,7 +47,7 @@ jobs:

- name: Setup OS
run: |
sudo ./setup_custom.sh
./setup_custom.sh

- name: List environment modules
run: |
Expand Down
11 changes: 11 additions & 0 deletions .github/workflows/docker-portability-custom.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,16 @@ on:
type: string
default: "dev"

ubuntu_codename:
description: "Ubuntu LTS"
required: true
type: choice
default: "resolute"
options:
- "jammy"
- "noble"
- "resolute"

boost_ver:
description: "Boost version"
required: true
Expand Down Expand Up @@ -60,6 +70,7 @@ jobs:
include:
- tags: chaste/runner:portability-${{github.event.inputs.tag_suffix }}
build-args: |
BASE=${{ github.event.inputs.ubuntu_codename }}
BOOST=${{ github.event.inputs.boost_ver }}
HDF5=${{ github.event.inputs.hdf5_ver }}
PETSC=${{ github.event.inputs.petsc_ver }}
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/docker-portability-system.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ on:
description: "Ubuntu codename"
required: true
type: string
default: "jammy"
default: "resolute"

jobs:
docker:
Expand Down
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