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Missing citation file in GitHub?

Status: Open.

#5509 In DataBiosphere/toil;

· kinow opened on May 1, 2026

Add the deprecation warnings to Google provisioner

Status: Open.

#5506 In DataBiosphere/toil;

· unito-bot opened on Apr 30, 2026

pytest import fails if kubeconfig has invalid OIDC token

Status: Open.

#5505 In DataBiosphere/toil;

· avnig05 opened on Apr 29, 2026

Toil should recognize when workflows not run by TRS ID have a TRS ID assigned, and associate it woth the workflow

Status: Open.

#5504 In DataBiosphere/toil;

· adamnovak opened on Apr 29, 2026

DRY: use sphinxcontrib-autoprogram to not repeat CLI option help text

good first issue

intern

Status: Open.

#5503 In DataBiosphere/toil;

· mr-c opened on Apr 27, 2026

src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_cancel_before_setup fails on Python below 3.14

Status: Open.

#5501 In DataBiosphere/toil;

· adamnovak opened on Apr 22, 2026

src/toil/test/utils/toilDebugTest.py::TestDebugJob::test_retrieve_task_directory is flaky and can fail when a container cannot be created

Status: Open.

#5490 In DataBiosphere/toil;

· adamnovak opened on Apr 13, 2026

Update the Toil web site to avoid an externally managed environment error on install

intern

Status: Open.

#5488 In DataBiosphere/toil;

· unito-bot opened on Apr 10, 2026

Toil should add a pipx install bin to its own PATH

intern

Status: Open.

#5487 In DataBiosphere/toil;

· unito-bot opened on Apr 10, 2026

Tests that need multiple CPU cores don't know how many CPU cores they need to pass, and can fail when the system has too few

intern

testing

Status: Open.

#5482 In DataBiosphere/toil;

· sanvila opened on Mar 31, 2026

CPU usage warnings are too sensitive/noisy

intern

Status: Open.

#5478 In DataBiosphere/toil;

· adamnovak opened on Mar 25, 2026

Record CPU usage of Docker containers under CWL

enhancement

intern

Status: Open.

#5477 In DataBiosphere/toil;

· adamnovak opened on Mar 24, 2026