ENSGENOMIO-18 Module for splitting FASTA file#32
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markquintontulloch wants to merge 10 commits intomainfrom
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ENSGENOMIO-18 Module for splitting FASTA file#32markquintontulloch wants to merge 10 commits intomainfrom
markquintontulloch wants to merge 10 commits intomainfrom
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markquintontulloch
requested review from
Dishalodha,
JAlvarezJarreta,
shradhaebi and
vsitnik
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Moving python code/tests to ensembl-genomio as requested by @Dishalodha |
Author
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Python components now moved to ensembl-genomio |
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Incorporates functionality from Bio::EnsEMBL::EGPipeline::Common::RunnableDB::FastaSplit and script currently used in GenomIO pipelines (splitting on sequences of Ns not currently implemented).
Structure of output folders mirrors that of the Perl module, with optional input parameters to determine degree of nesting.
Optional AGP file generation.