Refactors layers

API/enums/actions.m

@@ -1,5 +1,5 @@
 classdef actions < customEnum
-  % Ways in which a background can be included in a contrast.
+    % Ways in which a background can be included in a contrast.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/allowedTypes.m

@@ -1,5 +1,5 @@
 classdef allowedTypes < customEnum
-  % Ways of defining a background or resolution.
+    % Ways of defining a background or resolution.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/boundHandlingOptions.m

@@ -1,5 +1,5 @@
 classdef boundHandlingOptions < customEnum
-  % Options for bound handling in DREAM.
+    % Options for bound handling in DREAM.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/calculationTypes.m

@@ -1,6 +1,6 @@
 classdef calculationTypes < customEnum
-  % Types of calculation that can be performed by RAT.
-   methods (Static)
+    % Types of calculation that can be performed by RAT.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/coderEnums.m

@@ -1,5 +1,5 @@
 classdef coderEnums
-  % An Enum class which lets MATLAB Coder use Enums without redefinition or hardcoding.
+    % An Enum class which lets MATLAB Coder use Enums without redefinition or hardcoding.
     properties (Constant)
         actions = actions.toStruct()
         allowedTypes = allowedTypes.toStruct()

API/enums/displayOptions.m

@@ -1,5 +1,5 @@
 classdef displayOptions < customEnum 
-  % The available options for terminal output.
+    % The available options for terminal output.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/errorCodes.m

@@ -1,6 +1,6 @@
 classdef errorCodes < customEnum
-  % Internal error codes for MATLAB Coder exceptions (see compile/exceptions/coderException.m).
-   methods (Static)
+    % Internal error codes for MATLAB Coder exceptions (see compile/exceptions/coderException.m).
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/eventTypes.m

@@ -1,6 +1,6 @@
 classdef eventTypes < customEnum
-  % Types of output event from a RAT run.
-   methods (Static)
+    % Types of output event from a RAT run.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/geometryOptions.m

@@ -1,9 +1,9 @@
 classdef geometryOptions < customEnum
-  % Where the substrate roughness is placed.
-  %
-  % For air/substrate, it is placed at the end of the stack.
-  % For substrate/liquid, it is placed at the beginning of the stack.
-   methods (Static)
+    % Where the substrate roughness is placed.
+    %
+    % For air/substrate, it is placed at the end of the stack.
+    % For substrate/liquid, it is placed at the beginning of the stack.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/hydrationTypes.m

@@ -1,5 +1,5 @@
 classdef hydrationTypes < customEnum
-  % Options for the 'hydrate with' parameter of a Layer.
+    % Options for the 'hydrate with' parameter of a Layer.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/modelTypes.m

@@ -1,5 +1,5 @@
 classdef modelTypes < customEnum
-  % Types of layer model supported by RAT.
+    % Types of layer model supported by RAT.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/parallelOptions.m

@@ -1,5 +1,5 @@
 classdef parallelOptions < customEnum
-  % Ways in which the calculation can be parallelised.
+    % Ways in which the calculation can be parallelised.
     methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));

API/enums/priorTypes.m

@@ -1,6 +1,6 @@
 classdef priorTypes < customEnum
-  % Prior distributions for parameters in Bayesian algorithms.
-   methods (Static)
+    % Prior distributions for parameters in Bayesian algorithms.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/procedures.m

@@ -1,6 +1,6 @@
 classdef procedures < customEnum
-  % The algorithms available in RAT.
-   methods (Static)
+    % The algorithms available in RAT.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/enums/searchStrategy.m

@@ -1,6 +1,6 @@
 classdef searchStrategy < customEnum
-  % Strategies for generating base vectors in differential evolution.
-   methods (Static)           
+    % Strategies for generating base vectors in differential evolution.
+    methods (Static)           
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'), true);
         end

API/enums/supportedLanguages.m

@@ -1,6 +1,6 @@
 classdef supportedLanguages < customEnum
-  % Languages for custom files.
-   methods (Static)
+    % Languages for custom files.
+    methods (Static)
         function s = toStruct()
             s = customEnum.toStruct(mfilename('class'));
         end

API/projectClass/customFileClass.m

@@ -199,7 +199,7 @@
                 options.functionName = obj.varTable{row, 3}{:};
             end
             options.language = validateOption(options.language, 'supportedLanguages', obj.invalidLanguageMessage).value;
-            obj.setName(row, options.name); 
+            obj.setRowName(row, options.name); 
             obj.varTable{row, 2} = {obj.addFileExtension(options.filename, options.language)};
             obj.varTable{row, 4} = {options.language};
             obj.varTable{row, 5} = {obj.validatePath(options.path)};
@@ -344,40 +344,6 @@ function delete(obj)
         end
     end
 
-    methods(Access = protected)
-        function obj = setName(obj, row, name) 
-            % Sets the name of an existing custom file entry.
-            % 
-            % Examples
-            % --------
-            % To change the name of the second custom file in the table (custom file in row 2)
-            % 
-            % >>> file.setName(2, 'custom file 1');
-            % 
-            % To change the name of a custom file called 'custom file 1' to 'new custom file'
-            % 
-            % >>> file.setName('custom file 1', 'new custom file');
-            %
-            % Parameters
-            % ----------
-            % row : string or char array or whole number
-            %     If ``row`` is an integer, it is the row number of the custom file to update. If it is text, 
-            %     it is the name of the custom file to update.
-            % name : string or char array
-            %     The new name of the custom file.
-
-            % Name must not be an existing name
-            existingNames = obj.varTable{:,1};
-            existingNames(row) = [];
-            if any(strcmpi(name,existingNames))
-                throw(exceptions.duplicateName('Duplicate custom file names are not allowed'));
-            end
-
-            % Set the relevant name
-            obj.varTable{row, 1} = {name};
-        end
-    end
-
     methods(Access = private)
         function path = validatePath(~, path)
             % Validates custom file path exists.

API/projectClass/dataClass.m

@@ -201,7 +201,9 @@
             [options.dataRange, options.simRange] = obj.validateData(options.data, options.dataRange, options.simRange);
 
             if ~strcmp(options.name, obj.varTable{row, 1}{:})
-                nameChanged = obj.setName(row, options.name);
+                nameChanged.oldName = obj.varTable{row, 1};
+                nameChanged.newName = options.name;
+                obj.setRowName(row, options.name);
             end
             obj.varTable{row, 2} = {options.data};
             obj.varTable{row, 3} = {options.dataRange};
@@ -272,47 +274,6 @@ function displayTable(obj)
     end
 
     methods(Access = protected)  
-        function nameChanged = setName(obj, row, name)
-            % Sets the name of an existing dataset.
-            %
-            % Examples
-            % --------
-            % To change the name of the second dataset in the table (dataset in row 2)
-            % 
-            % >>> nameChanged = data.setName(2, 'Data SMW');
-            % 
-            % To change the name of a dataset called 'Data D20' to 'Data SMW'
-            % 
-            % >>> nameChanged = data.setName('Data D20', 'Data SMW');
-            %
-            % Parameters
-            % ----------
-            % row : string or char array or whole number
-            %     If ``row`` is an integer, it is the row number of the dataset to update. If it is text, 
-            %     it is the name of the dataset to update.
-            % name : string or char array
-            %     The new name of the dataset.
-            % 
-            % Returns
-            % -------
-            % nameChanged : struct
-            %     A struct which contains the former name ``oldName`` and the new name ``newName`` of the dataset.
-            arguments
-                obj
-                row
-                name {mustBeTextScalar, mustBeNonempty}
-            end
-            existingNames = obj.getNames;
-            if any(strcmpi(name, existingNames))
-                throw(exceptions.duplicateName('Duplicate data names are not allowed'));
-            end
-
-            % Set the relevant name
-            nameChanged.oldName = obj.varTable{row, 1};
-            nameChanged.newName = name;
-            obj.varTable{row, 1} = {name};   
-        end
-
         function [dataRange, simRange] = validateData(~, data, dataRange, simRange)
             % Checks the data and simulation ranges are valid. If any range is invalid, 
             % a warning is printed and the range is adjusted when possible.