First draft of binder design tutorial#282
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The original tutorial was written by Julia Bonzanini with support from Christian Schellhaas during the 2026 Tutorial Hackathon. PDF1 example still needs to be edited.
Minor file rearranging also occurred.
- Fixed cd28_nag.pdb: the F chain NAG molecule did not have a residue number - Updated the example runscript files to remove any system/user-specific information. I also removed the variables as they seemed unnecessary for such a simple runscript. - Added example output files for CD28 and PDF1 - Added a 'Step 3' section for the small molecule example - Corrected noisy and denoised trajectory file descriptions in the tutorial text.
Fixed missing motif definition.
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The original tutorial was written by Julia Bonzanini with support from Christian Schellhaas during the 2026 Tutorial Hackathon.
PDF1 example still needs to be edited.