Update dependencies and fix breakages from pyomo 6.10

[ParticularlyPythonicBS]

• Updated dependencies to latest versions
• Replaced sparse_iterkeys() with sparse_keys() to comply with pyomo 6.10 deprecation
• Wrapped critical sparse_keys() calls in set() in temoa/components/technology.py to ensure a stable lookups

Summary by CodeRabbit

Release Notes

• Bug Fixes

  • Enhanced error detection for invalid capacity factor configurations with improved error messaging.

• Improvements

  • Optimized internal model data structure handling across capacity, commodity, cost, and emissions components.
  • Refined model validation logic for improved data consistency checks.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

Run ID: b3bc4539-fa2f-4cac-b623-397a0cb5f28d

📥 Commits

Reviewing files that changed from the base of the PR and between 7f7ff86 and 5baa092.

⛔ Files ignored due to path filters (2)

• stubs/pyomo/core/base/param.pyi is excluded by !stubs/**
• uv.lock is excluded by !**/*.lock

📒 Files selected for processing (14)

• temoa/_internal/table_data_puller.py
• temoa/components/capacity.py
• temoa/components/commodities.py
• temoa/components/costs.py
• temoa/components/emissions.py
• temoa/components/geography.py
• temoa/components/limits.py
• temoa/components/reserves.py
• temoa/components/technology.py
• temoa/components/time.py
• temoa/model_checking/network_model_data.py
• temoa/model_checking/pricing_check.py
• temoa/model_checking/validators.py
• tests/test_full_runs.py

---

Walkthrough

This PR systematically replaces all usages of the sparse_iterkeys() API method with sparse_keys() across the codebase. Changes are primarily API method replacements with minimal functional modifications, except for enhancements to error handling and logic in a few components.

Changes

Cohort / File(s)	Summary
Components – API Migration (Sparse Keys) temoa/components/emissions.py, temoa/components/geography.py, temoa/components/reserves.py, temoa/components/time.py	Replaced sparse_iterkeys() with sparse_keys() for key iteration across sparse structures. No control flow or logic changes.
Components – API Migration + Enhanced Validation temoa/components/capacity.py	Replaced sparse_iterkeys() with sparse_keys() across capacity-related loops. Additionally strengthened error handling in capacity_factor_process by logging and raising ValueError on invalid (r, p, t, v) combinations instead of silently continuing.
Components – API Migration + Logic Expansion temoa/components/commodities.py	Replaced sparse_iterkeys() with sparse_keys() in commodity and demand iterations. Extended tech_demand population logic to include technologies where output commodity is in model.commodity_demand.
Components – API Migration (Costs & Emissions Indices) temoa/components/costs.py, temoa/components/limits.py	Replaced sparse_iterkeys() with sparse_keys() across cost, emission, and constraint index builders. Adjusted filtering logic conditions to work with new key accessor method.
Components – API Migration + Set Materialization temoa/components/technology.py	Replaced sparse_iterkeys() with sparse_keys(), but now wraps results in set() before iteration. This materializes keys and alters evaluation order compared to direct iteration.
Internal Modules – API Migration temoa/_internal/table_data_puller.py	Replaced sparse_iterkeys() with sparse_keys() across poll_flow_results, poll_cost_results, and poll_emissions functions. Iteration semantics preserved.
Model Checking – API Migration temoa/model_checking/network_model_data.py, temoa/model_checking/validators.py	Replaced sparse_iterkeys() with sparse_keys() for model.demand, model.linked_techs, and reserve margin iterations.
Model Checking – API Migration + Tuple Unpacking Adjustments temoa/model_checking/pricing_check.py	Replaced sparse_iterkeys() with sparse_keys() and adjusted tuple unpacking to match new key shapes. Updated efficiency_rtv and cost-related dictionary constructions to align with sparse_keys() return format.
Tests – API Migration tests/test_full_runs.py	Replaced sparse_iterkeys() with sparse_keys() in efficiency parameter size computation for test assertions.

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Possibly related PRs

• Refactoring repo and restructuring temoa initialize and rules #158: Large refactor reorganizing temoa_initialize/rules into component modules; both PRs modify the same component files and sparse data structure API surfaces.

Suggested labels

bugfix, Maintenance

🚥 Pre-merge checks | ✅ 2 | ❌ 1

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 58.97% which is insufficient. The required threshold is 80.00%.	Write docstrings for the functions missing them to satisfy the coverage threshold.

✅ Passed checks (2 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title directly reflects the main objective of the PR: updating dependencies and fixing compatibility issues from Pyomo 6.10 by replacing deprecated sparse_iterkeys() with sparse_keys().

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

• 📝 Generate docstrings (stacked PR)
• 📝 Generate docstrings (commit on current branch)

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch update_pyomo_and_fix

📝 Coding Plan

• Generate coding plan for human review comments

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

Tip

You can get early access to new features in CodeRabbit.

Enable the early_access setting to enable early access features such as new models, tools, and more.