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@antigenomics

AntigenOmics

Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and software tools. Home of the VDJdb database.

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  1. vdjdb-db vdjdb-db Public

    🗂️ Git-based TCR database storage & management. Submissions welcome!

    Python 153 27

  2. vdjmatch vdjmatch Public

    ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

    Groovy 39 7

  3. vdjviz vdjviz Public

    🛜 A lightweight immune repertoire browser

    JavaScript 27 8

  4. tcren-ms tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    Parrot 24 4

  5. tcr-annotation-methodology tcr-annotation-methodology Public

    📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

    TeX 14 4

  6. public-epitope public-epitope Public

    📝 [Paper] Exploring the landscape of specific TCR precursor frequencies

    1 2

Repositories

Showing 10 of 54 repositories
  • vdjdb-db Public

    🗂️ Git-based TCR database storage & management. Submissions welcome!

    antigenomics/vdjdb-db’s past year of commit activity
    Python 153 AGPL-3.0 27 114 0 Updated Mar 18, 2026
  • vdjdb-web Public

    🛜 An interactive browser for the VDJdb database

    antigenomics/vdjdb-web’s past year of commit activity
    TypeScript 15 Apache-2.0 1 10 3 Updated Mar 14, 2026
  • vdjdb-db-validation Public

    📝 [Commentary] Infographics for VDJdb records validation

    antigenomics/vdjdb-db-validation’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Mar 12, 2026
  • mirpy Public

    🐍 A python library and snippets for immune repertoire data analysis, based on @antigenomics lab in-house scripts

    antigenomics/mirpy’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 3 0 0 Updated Mar 7, 2026
  • public-epitope Public

    📝 [Paper] Exploring the landscape of specific TCR precursor frequencies

    antigenomics/public-epitope’s past year of commit activity
    1 2 0 0 Updated Mar 6, 2026
  • tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    antigenomics/tcren-ms’s past year of commit activity
    Parrot 24 4 1 1 Updated Mar 6, 2026
  • hla-go-ms Public

    📝 [Paper] HLA ligandome and parent protein Gene Ontology associations

    antigenomics/hla-go-ms’s past year of commit activity
    1 0 1 0 Updated Mar 6, 2026
  • vdjmatch Public

    ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

    antigenomics/vdjmatch’s past year of commit activity
    Groovy 39 7 7 0 Updated Feb 23, 2026
  • tcrenc Public

    TCR sequence (auto)encoders

    antigenomics/tcrenc’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 11, 2026
  • tcr-covid-classifier Public

    📝 [Paper] TCR motifs associated with infectious conditions and HLAs

    antigenomics/tcr-covid-classifier’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 17, 2025

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