Add Khaliq Lab SNc dopaminergic AIS notebook for dandiset 001693#148
Open
h-mayorquin wants to merge 1 commit intodandi:masterfrom
Open
Add Khaliq Lab SNc dopaminergic AIS notebook for dandiset 001693#148h-mayorquin wants to merge 1 commit intodandi:masterfrom
h-mayorquin wants to merge 1 commit intodandi:masterfrom
Conversation
|
Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR adds a notebook under
001693/KhaliqLab/snc_dopaminergic_ais/for the Khaliq lab dataset (DANDI:001693), whole-cell current-clamp recordings from substantia nigra pars compacta dopaminergic neurons that probe how axon initial segment morphology shapes intrinsic firing, with three protocols per cell (spontaneous firing, current steps, after-depolarization). The README in the folder describes the notebook and the dataset in more detail.The accompanying
environment.ymlpins all dependencies (Python 3.13, dandi 0.74.3, pynwb 3.1.2, h5py 3.15.1, numpy 2.3.4, matplotlib 3.10.7, remfile 0.1.13).Dandiset 001693 is currently embargoed, so the notebook streams via
client.dandi_authenticate()withstrip_query=False, following the same pattern already used for the embargoed000718/CaiLab/zaki_2024notebook. Once the dandiset is unembargoed, thedandi_authenticate()call can be removed.