Merge upgraded Type Management System#1299

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dimitri-yatsenko wants to merge 61 commits intodatajoint:claude/spec-issue-1243-YvqmFfrom

dimitri-yatsenko:spec-issue-1243-rebased

Commits on Dec 24, 2025

Merge remote-tracking branch 'origin/claude/add-file-column-type-LtXQt' into claude/upgrade-adapted-type-1W3ap
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Commits on Dec 25, 2025

Add storage types redesign spec
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Merge remote-tracking branch 'origin/pre/v2.0' into claude/upgrade-adapted-type-1W3ap
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Update storage types spec with OAS integration approach

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Unify external storage under OAS with content-addressed region

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Make <djblob@store> and <attach@store> return values transparently

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Introduce layered storage architecture with content core type

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Add parameterized AttributeTypes and content vs object comparison

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Make content storage per-project and add migration utility

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Add filepath as third OAS region with ObjectRef interface

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Redesign filepath as URI reference tracker and add json core type

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Simplify filepath to filepath@store with relative paths for portability

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Simplify to two-layer architecture: database types + AttributeTypes

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Add three-layer type architecture with core DataJoint types

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Use angle brackets for all AttributeTypes in definitions

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Add implementation plan for storage types redesign

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Implement Phase 1: Core type system with store parameter support

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Remove legacy AttributeAdapter support, update tests for AttributeType

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Simplify core type system: remove SERIALIZED_TYPES, clarify blob semantics

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Simplify type system: only core types and AttributeTypes

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Define complete core type system with blob→longblob mapping

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Implement Phase 2: Content-Addressed Storage

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Apply ruff-format to content_registry.py

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Remove legacy compatibility shims: attribute_adapter.py, bypass_serialization

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Update implementation plan to reflect actual implementation

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Move built-in AttributeTypes to separate builtin_types.py module

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Implement ObjectType for path-addressed storage

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Remove migration phase from implementation plan

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Add staged insert documentation to implementation plan

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Implement Phase 3: AttachType, XAttachType, FilepathType

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Implement Phase 5 (GC) and Phase 6 (Tests)

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Commits on Dec 26, 2025

Commits on Dec 30, 2025

Replace ClassProperty with metaclass properties

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Commits on Dec 31, 2025

Commits on Jan 1, 2026

Cherry-pick AutoPopulate 2.0 spec and initial implementation
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Drop jobs table when auto-populated table is dropped

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Add tests for Autopopulate 2.0 jobs system

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Fix ruff linting errors and reformat

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Remove legacy schema-wide jobs system

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Rename jobs_v2.py to jobs.py

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Improve jobs.py: use update1, djblob, cleaner f-string

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Simplify reserve() to use update1

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Use update1 in complete() method

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Simplify: use self.proj() for jobs table projections

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Simplify ignore(): only insert new records, cannot convert existing

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Use insert1 in _insert_job_with_status instead of explicit SQL

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Remove AutoPopulate._job_key - no longer needed

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Remove AutoPopulate.target property

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Remove legacy _make_tuples callback support - use self.make exclusively

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Eliminate _jobs_to_do method

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Simplify jobs variable usage in populate()

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Inline _get_pending_jobs into populate()

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Remove order parameter and consolidate limit/max_calls

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Fix integration issues after AutoPopulate 2.0 rebase

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