refactor: merge john-development to main#187

Merged

sbillinge merged 22 commits intodiffpy:mainfrom

john-halloran:john-development-to-main

Feb 19, 2026

Commits on Apr 1, 2025

Initial commit of John refactor of SNMF (#140)

authored

Commits on Apr 9, 2025

fix stop condition and add Y/A normalization (#141)

john-halloran
and
John Halloran
authored

Commits on Apr 14, 2025

Added x normalization (#143)

authored

Commits on Apr 30, 2025

Loop cleanup and scikit-learn style parameters (#146)

john-halloran
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John Halloran
authored

Commits on Jun 15, 2025

feat: Add random state feature. (#150)

authored

Commits on Jun 19, 2025

refactor: Remove old tests and source files (#160)

john-halloran
and
John Halloran
authored

Commits on Jun 21, 2025

style: convert variables to lowercase (#159)

john-halloran
and
John Halloran
authored

Commits on Jul 22, 2025

Fixes to class attributes and style (#163)

john-halloran
and
John Halloran
authored

Commits on Aug 12, 2025

Restored functionality to working state (#165)

john-halloran
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John Halloran
authored
feat: add live plotting of updates (#166)

john-halloran
and
John Halloran
authored

Commits on Aug 13, 2025

test: add initial test of optimizer (#167)

john-halloran
and
John Halloran
authored

Commits on Aug 14, 2025

Replace 1D apply_interpolation with np.interp (#168)

john-halloran
and
John Halloran
authored

Commits on Aug 20, 2025

refactor: reconstruct separate from residuals (#169)

john-halloran
and
John Halloran
authored

Commits on Aug 24, 2025

refactor: move optimization out of init and into fit (#170)

john-halloran
and
John Halloran
authored

Commits on Aug 25, 2025

refactor: apply_interpolation_matrix() is now compute_stretched_components() (#171)

john-halloran
and
John Halloran
authored

Commits on Nov 26, 2025

refactor: change get_objective_function into a static method and getter (#174)

john-halloran
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John Halloran
authored

Commits on Jan 29, 2026

skpkg: apply black to all files in the project directory (#176)

john-halloran
and
John Halloran
authored

Commits on Jan 31, 2026

chore: update package to latest scikit-package version (#178)

authored

Commits on Feb 8, 2026

feat: skip updating stretch if stretching factor is zero (#181)

john-halloran
and
John Halloran
authored

Commits on Feb 10, 2026

docs: revamp documentation (#182)

john-halloran
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John Halloran
authored

Commits on Feb 18, 2026

refactor: change references of snmf to stretched-nmf (#185)

john-halloran
and
John Halloran
authored

Commits on Feb 19, 2026

Merge upstream/main into john-development (prefer rewrite on conflicts)
John Halloran
committed