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Pull requests: genome/analysis-workflows

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Pull requests list

Also update the docs updater to python 3.10 and newer cwltool.
#1087 opened Jun 21, 2023 by tmooney Member Loading…
1
Updates to immuno workflow for upcoming 4.0.0 release
#1085 opened Mar 10, 2023 by susannasiebert Contributor • Draft
2
Port changes from tmooney/analysis-wdls#1.
#1084 opened Feb 22, 2023 by tmooney Member Loading…
Use sambamba for duplicate marking.
#1082 opened Dec 13, 2022 by tmooney Member Loading…
1
FDA table generation: the output table_file_name is required
#1079 opened Oct 18, 2022 by tmooney Member Loading…
1
germline joint detect variants workflow
#1043 opened Jul 15, 2021 by apaul7 Member Loading…
16
Adding LLR and MAPQ column to variants table
#1019 opened Mar 23, 2021 by saimukund20 Collaborator Loading…
3
Updating bisulfite pipeline to accept bams and fastqs
#996 opened Jan 27, 2021 by chrisamiller Collaborator • Draft
3
somatic_exome cram version
#973 opened Dec 8, 2020 by johnegarza Member • Draft
1
more docs for somatic exome
#872 opened Feb 4, 2020 by zlskidmore Collaborator Loading…
10
Updated workflow for basic UMI-aware alignment and qc
#840 opened Dec 9, 2019 by jasonwalker80 Member Loading…
2
Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels)
#714 opened Jun 18, 2019 by jasonwalker80 Member Loading…
Basic Exome Alignment +QC Workflow (non-human)
#713 opened Jun 18, 2019 by jasonwalker80 Member Loading…
3
Update interval input
#618 opened Apr 3, 2019 by jasonwalker80 Member • Draft
2
Cram support
#609 opened Mar 19, 2019 by zlskidmore Collaborator Loading…
3
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