v0.22.1

Changelog

0.22.1 (2026-04-22)

Fix

• skip overlapping variants in get_diffs_sparse to match reconstruction logic

[main 49895a2] bump: version 0.22.0 → 0.22.1
2 files changed, 10 insertions(+), 1 deletion(-)

v0.22.0

Changelog

0.22.0 (2026-04-20)

Adds splicing functionality. Major thanks to @bschilder for his help on this!

Feat

• SVAR support passes all tests
• SVAR support passes all tests
• add members to conveniently inspect dataset splicing info.
• move indices and transformation to torch dataset/dataloader API since these are generally never needed outside that context. feat: fully functional zero-copy splicing mechanics. fix: bug in rev and rev comp causing garbage output.
• wip: testing spliced return values
• initial prototype for splicing.

Fix

• scope RUSTFLAGS rpath to osx-arm64 only
• support osx-arm64, add contributing instructions
• enable cargo test for PyO3 extension crate
• correct ploidy interleaving in _cat_length
• pack ak.where results in _rc to prevent buffer leak
• make sure exonic filter gets applied. style: adhere to pre-commit
• exons are already in reverse order for negative stranded genes
• virtual indexing for splice indexer
• data corruption when rc_helper is parallelized
• map contig names appropriately for bounds checking on ds regions + ref
• continue migrating to seqpro Ragged, enable logger at module level, add warnings about potential reference genome mismatches
• add spanning dels to test and fix hap ilens for this case
• variant index -> variant info mapping
• add spanning dels to test and fix hap ilens for this case
• parsing splice info and returning single item instead of list
• update spliced_bed in with_settings for splice_info
• getitem type annotations for StrIdx
• spliced i2d_map

[main 3d95d85] bump: version 0.21.4 → 0.22.0
2 files changed, 36 insertions(+), 1 deletion(-)

0.21.4

0.21.4 (2026-03-26)

Fix

• chained subset_to y str names

[main 1023776] bump: version 0.21.3 → 0.21.4
2 files changed, 7 insertions(+), 1 deletion(-)

0.21.3

0.21.3 (2026-03-25)

Fix

• repeated subset_to

[main 3ac3ffe] bump: version 0.21.2 → 0.21.3
2 files changed, 7 insertions(+), 1 deletion(-)

0.21.2

0.21.2 (2026-03-17)

Fix

• repeated subset_to
• bump genoray

[main b8cd5fe] bump: version 0.21.1 → 0.21.2
2 files changed, 8 insertions(+), 1 deletion(-)

0.21.1

0.21.1 (2026-03-09)

Fix

• bump genoray

[main 3f05c5a] bump: version 0.21.0 → 0.21.1
2 files changed, 7 insertions(+), 1 deletion(-)

0.21.0

0.21.0 (2026-02-26)

Feat

• add option to extend lengths or not for gvl.write() fix: contig normalization

Fix

• add cli as optional dependency

[main b22275b] bump: version 0.20.0 → 0.21.0
2 files changed, 11 insertions(+), 1 deletion(-)

0.20.0

0.20.0 (2026-02-05)

Feat

• support python 3.13
• upgrade to genoray 2

Fix

• numba weirdness

[main 7df3090] bump: version 0.19.1 → 0.20.0
2 files changed, 12 insertions(+), 1 deletion(-)

0.19.1

0.19.1 (2025-12-20)

Fix

• perf: upgrade genoray for (much) faster writes. test: idempotent fixutres in test_ds_haps

[main e41f7f7] bump: version 0.19.0 → 0.19.1
2 files changed, 7 insertions(+), 1 deletion(-)

0.19.0

0.19.0 (2025-12-03)

Feat

• allow subsetting by region name. fix: convert eligible ak.Array to sp.rag.Ragged for gvl.RaggedVariants whenever possible

[main babe777] bump: version 0.18.3 → 0.19.0
2 files changed, 7 insertions(+), 1 deletion(-)