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Pull requests: nextstrain/augur

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Pull requests list

subsample: Add helper function for setting --nthreads enhancement New feature or request
#1963 opened Feb 21, 2026 by victorlin Member Loading…
5 tasks done
subsample: Print errors from get_referenced_files
#1955 opened Jan 30, 2026 by victorlin Member Loading…
4 of 5 tasks
Update pandas requirement from <3,>=1.4.0 to >=1.4.0,<4 dependencies Pull requests that update a dependency file python Pull requests that update python code
#1951 opened Jan 26, 2026 by dependabot Bot Loading…
Handle ambiguity in --min-date and --max-date
#1914 opened Oct 22, 2025 by victorlin Member Draft
2 of 5 tasks
chore: Some typing-related improvements
#1860 opened Jul 20, 2025 by corneliusroemer Member Loading…
4 tasks done
Clade definition inheritance
#1836 opened Jun 27, 2025 by jameshadfield Member Draft
New command: augur curate apply-date-bounds
#1828 opened Jun 11, 2025 by victorlin Member Loading…
3 of 5 tasks
Aligner extra args
#1790 opened Apr 16, 2025 by vbadelita Loading…
4 tasks done
DRAFT: add 'gene' feature capture when reading genbank files
#1435 opened Mar 8, 2024 by j23414 Contributor Draft
3 tasks
filter: Improve help text
#1430 opened Mar 5, 2024 by victorlin Member Draft
2 of 3 tasks
Report actual missing filename for index paths
#1014 opened Aug 5, 2022 by huddlej Contributor Loading…
2 tasks done
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