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new module: stitchr#10812

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Clara0611 wants to merge 2 commits intonf-core:masterfrom
Clara0611:stitchr
Open

new module: stitchr#10812
Clara0611 wants to merge 2 commits intonf-core:masterfrom
Clara0611:stitchr

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@Clara0611
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@Clara0611 Clara0611 commented Mar 13, 2026

New module: stitchr

Stitchr is a tool that generates full nucleotide and amino acid TCR sequences from V-, J- and CDR3 information.

Testdata is still missing, waiting for PR

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR. -> Waiting for testdata PR
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements. -> Not possible, added Dockerfile
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker

@Clara0611 Clara0611 marked this pull request as draft March 13, 2026 10:18
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Draft PR - still waiting for testdata merge (here

@Clara0611 Clara0611 marked this pull request as ready for review March 13, 2026 10:57
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