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    16 repositories

    • Topp-Roots-Lab.github.io

      Public
      Lab website
      HTML
      •
      Other
      •2•1•0•0•Updated Aug 19, 2025Aug 19, 2025

    • rsa-gui

      Public
      User-controlled pipeline for analyzing plant root system architecture
      Java
      •4•3•5•1•Updated Apr 16, 2024Apr 16, 2024

    • 3d-root-crown-analysis-pipeline

      Public
      A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.
      Python
      •1•3•16•0•Updated Feb 23, 2024Feb 23, 2024

    • TopoRoot_v2

      Public
      C++
      •3•0•0•0•Updated Oct 9, 2023Oct 9, 2023

    • taghelper

      Public
      Python scripts that allow synching of fieldbooks, the tagdb, and barcode strings.
      Python
      •
      MIT License
      •1•0•1•0•Updated Aug 4, 2023Aug 4, 2023

    • soil-analysis-scripts

      Public
      Hub for various scripts involved in quantifying soil metrics
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • python-rawtools

      Public
      Utility library for consuming and manipulating x-ray volume data in .raw format.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•6•1•Updated Mar 21, 2023Mar 21, 2023

    • TopoRoot

      Public
      HTML
      •5•1•0•0•Updated Mar 7, 2023Mar 7, 2023

    • 3D_reconstruction

      Public
      Algorithm for 3d reconstruction from rotational image sequence
      C++
      •3•0•1•0•Updated Mar 7, 2023Mar 7, 2023

    • Gia3D

      Public
      Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton".
      C++
      •0•1•1•0•Updated Mar 7, 2023Mar 7, 2023

    • DynamicRoots-shinyRoots-Bundled

      Public
      This repository bundles DynamicRoots and shinyRoots, including scripts for batch processing
      Python
      •0•0•1•0•Updated Mar 7, 2023Mar 7, 2023

    • New3DTraitsForRPF

      Public archive
      MATLAB
      •0•0•0•0•Updated Sep 7, 2021Sep 7, 2021

    • rsa-tools

      Public archive
      External tools used by the GUI for analyzing plant root system architecture
      C++
      •0•1•0•0•Updated Feb 13, 2021Feb 13, 2021

    • Grapevine-inflorescence-architecture

      Public archive
      MATLAB
      •1•3•0•0•Updated Oct 8, 2019Oct 8, 2019

    • 3D-Sorghum-Inflorescence

      Public archive
      C++
      •1•1•0•0•Updated Sep 27, 2019Sep 27, 2019

    • timeseries_analysis

      Public archive
      scripts used for analysis of root growth
      R
      •4•0•0•0•Updated Apr 16, 2019Apr 16, 2019
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