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reduce default chunksize for reactome embedding generation #93

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Merged
heliamoh merged 1 commit into from
Sep 27, 2025
Merged

reduce default chunksize for reactome embedding generation #93

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2 changes: 2 additions & 0 deletions src/data_generation/reactome/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -53,11 +53,13 @@ def upload_to_chromadb(
embeddings_instance: Embeddings
if hf_model is None: # Use OpenAI
embeddings_instance = OpenAIEmbeddings(
chunk_size=500,
show_progress_bar=True,
)
elif hf_model.startswith("openai/text-embedding-"):
embeddings_instance = OpenAIEmbeddings(
model=hf_model[len("openai/") :],
chunk_size=500,
show_progress_bar=True,
)
elif "HUGGINGFACEHUB_API_TOKEN" in os.environ:
Expand Down