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Recent fix for scanpy private imports incorrect

Status: Open.

#1101 In scverse/squidpy;

· jimmymathews opened on Jan 23, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1100 In scverse/squidpy;

· scverse-bot opened on Jan 22, 2026

Integration Testing CI Test Failure on python 3.13

Status: Open.

#1099 In scverse/squidpy;

· scverse-bot opened on Jan 22, 2026

Investigate why docutils<0.22 is needed.

Status: Open.

#1098 In scverse/squidpy;

· selmanozleyen opened on Jan 21, 2026

Handle cases explicitly for <code>KeyError</code> or <code>ValueError</code> in <code>_make_tiles</code>

Status: Open.

#1086 In scverse/squidpy;

· selmanozleyen opened on Dec 17, 2025

Consider having a <code>_typing.py</code> or a way to restructure common type aliases

Status: Open.

#1085 In scverse/squidpy;

· selmanozleyen opened on Dec 16, 2025

We should stop using non-public <code>scanpy.logging.info</code>

Status: Open.

#1081 In scverse/squidpy;

· selmanozleyen opened on Dec 14, 2025

<code>make_tiles</code> doesn't copy transformations from the image it took as input

Status: Open.

#1079 In scverse/squidpy;

· timtreis opened on Dec 8, 2025

<code>make_tiles</code> function always places the tiles in the <code>global</code> coordinate system

Status: Open.

#1078 In scverse/squidpy;

· timtreis opened on Dec 6, 2025

how to highlight specific cluster in spatial_scatter function

Status: Open.

#1060 In scverse/squidpy;

· perl-xxp opened on Nov 12, 2025

Adding more tests for usage of given keys

Status: Open.

#1055 In scverse/squidpy;

· selmanozleyen opened on Nov 7, 2025

Incorrect dataset link for <code>Analyze Xenium data</code> tutorial

Status: Open.

#1049 In scverse/squidpy;

· matt-sd-watson opened on Oct 23, 2025