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First go at implementing sgkit-dev/vcf-zarr-spec#41 in vcztools (do not merge).

All tests pass locally when used in conjunction with sgkit-dev/bio2zarr#420. However, this needs more work as it's not backwards compatible with earlier versions of NumPy and Zarr.

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tomwhite commented Jan 8, 2026

This was done in #249. See also comment in sgkit-dev/bio2zarr#420 (comment) - we could add some tests here in vcztools to run with BIO2ZARR_ZARR_FORMAT=3.

@tomwhite tomwhite closed this Jan 8, 2026
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