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1 change: 1 addition & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
# bayesplot (development version)

* Validate user-provided `pit` values in `ppc_loo_pit_data()` using `validate_pit()` to reject invalid inputs (non-numeric, out of range, NAs) at the entry point instead of in internal helpers.
* Eliminate redundant data processing in `mcmc_areas_data()` by reusing the prepared MCMC array for both interval and density computation.
* Validate equal chain lengths in `validate_df_with_chain()`, reject missing
chain labels, and renumber data-frame chain labels internally when converting
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14 changes: 5 additions & 9 deletions R/ppc-loo.R
Original file line number Diff line number Diff line change
Expand Up @@ -302,7 +302,7 @@ ppc_loo_pit_data <-
boundary_correction = TRUE,
grid_len = 512) {
if (!is.null(pit)) {
stopifnot(is.numeric(pit), is_vector_or_1Darray(pit))
pit <- validate_pit(pit)
inform("'pit' specified so ignoring 'y','yrep','lw' if specified.")
} else {
suggested_package("rstantools")
Expand Down Expand Up @@ -795,14 +795,6 @@ ppc_loo_ribbon <-
# Generate boundary corrected values via a linear convolution using a
# 1-D Gaussian window filter. This method uses the "reflection method"
# to estimate these pvalues and helps speed up the code
if (any(is.infinite(x))) {
warn(paste(
"Ignored", sum(is.infinite(x)),
"Non-finite PIT values are invalid for KDE boundary correction method"
))
x <- x[is.finite(x)]
}

if (grid_len < 100) {
grid_len <- 100
}
Expand All @@ -824,6 +816,10 @@ ppc_loo_ribbon <-

xs <- (grid_breaks[2:n_breaks] + grid_breaks[1:(n_breaks - 1)]) / 2

if (all(is.na(bc_pvals))) {
abort("KDE boundary correction produced all NA values.")
}

first_nonNA <- utils::head(which(!is.na(bc_pvals)), 1)
last_nonNA <- utils::tail(which(!is.na(bc_pvals)), 1)
bc_pvals[1:first_nonNA] <- bc_pvals[first_nonNA]
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26 changes: 16 additions & 10 deletions tests/testthat/test-ppc-loo.R
Original file line number Diff line number Diff line change
Expand Up @@ -59,17 +59,23 @@ test_that("ppc_loo_pit_overlay works with boundary_correction=FALSE", {
expect_gg(p1)
})

test_that(".kde_correction warns when PIT values are non-finite", {
set.seed(123)
pit_vals <- c(stats::runif(500), Inf)
expect_warning(
out <- .kde_correction(pit_vals, bw = "nrd0", grid_len = 128),
"Non-finite PIT values are invalid"
test_that("ppc_loo_pit_data validates user-provided pit values", {
expect_error(
ppc_loo_pit_data(pit = c(0.5, Inf)),
"between 0 and 1"
)
expect_error(
ppc_loo_pit_data(pit = c(-1, 0.5)),
"between 0 and 1"
)
expect_error(
ppc_loo_pit_data(pit = c(0.5, NA)),
"NAs not allowed"
)
expect_error(
ppc_loo_pit_data(pit = "not numeric"),
"is.numeric"
)
expect_type(out, "list")
expect_true(all(c("xs", "bc_pvals") %in% names(out)))
expect_equal(length(out$xs), 128)
expect_equal(length(out$bc_pvals), 128)
})

test_that("ppc_loo_pit_qq returns ggplot object", {
Expand Down
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