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utkukose/README.md

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🎓 About Me

I am a Full Professor of Computer Engineering and AI researcher working at the intersection of Explainable AI (XAI), Digital Twins, interdisciplinary AI applications, AI in biomedical / healthcare and decision support systems.

  • 🏫 Süleyman Demirel University — Isparta, Turkey (primary affiliation)
  • 🌎 Universidad Panamericana — Mexico City, Mexico
  • 🇺🇸 University of North Dakota — Grand Forks, USA
  • 🇮🇳 VelTech University — Chennai, India

📌 Currently leading STING DSS (TÜBİTAK 1001 No. 123E383) — a clinical decision support system for pediatric acute lymphoblastic leukemia drug repositioning using Digital Twins and Deep Learning.

🏅 SM'IEEE (Senior Member) · M'ACM (Professional Member) · Associate Editor, IEEE Access


📊 Research at a Glance

📄 Publications 🔢 h-index 🧪 Open-Source Libraries 🏆 Active Projects
350+ 43 GEMEX · PharmODE STING DSS · MoGAIT

🚀 Projects

🔬 Research Libraries & Clinical Systems

Project Description Status
🧬 STING DSS Clinical DSS for pediatric ALL drug repositioning · FastAPI + React + Digital Twin + Bi-LSTM + GNN + GAN 🟢 Active
🔍 GEMEX Geodesic Entropic Manifold Explainability · Riemannian XAI library on PyPI · IEEE ICHORA 2026 🟢 v1.2.2
💊 PharmODE Automated PK/PD ODE model identification · NCA · Bayesian · Neural ODE · SINDy · DDI 🟢 v1.0.0

🌐 Interactive Demos & Simulation Platforms

Project Description Status
🦾 MoGAIT Browser-based rehabilitation robotics & gait analysis · AI Hackathon for People with Disabilities 🟢 Active
cyber_duel_in_smart_infrastructures Adversarial ML security simulation for CPS · XAI + Digital Twin · zero-dependency single HTML · UND Distinguished Webinar 2026 🟢 Active
🧠 MoralLLM-Lab Browser-only lab probing LLM moral reasoning · 15 dilemmas × 6 ethical framings (Kantian, utilitarian, and more) 🟢 Active
🏥 XAI-Health-Demo-with-Digital-Twin Interactive XAI + Digital Twin web app for personal health risk analysis · QR-based participant entry · bilingual TR/EN 🟢 Active
🔍 gemex_playground Ready-to-run browser playground for the GEMEX XAI framework · Pyodide-powered · zero install 🟢 Active

📚 Educational & Research Toolkits

Project Description Status
🧪 xai-healthcare-NB-lecture 23-notebook graduate XAI in Healthcare course · Modules 1–6 · Universidad Panamericana 🟢 Active
🤖 llm_persona_hallucination_study Persona vectors for controlling LLM hallucination · TruthfulQA + SQuAD v2 · IEEE CARS 2025 🟢 v1.0.2
🏥 synthetic_health_tourist AI-driven synthetic health tourist profiling · Autoencoders + PCA + k-Means + LLM · w/ Gamze Köse 🟢 Active
🌐 ALEV Adaptive Live Event Venue · Telegram-based gamified hackathon management · FastAPI + PostgreSQL + Docker 🟢 Active
🧬 DigitalPatient_enhanced-fork Computational patient digital twin UI · animated organ SVG + real-time physiological charts · fork of Barbiero & Liò 2020 🟢 Active

🛠️ Tech Stack

Languages & Frameworks

Python JavaScript React FastAPI Docker

AI / ML / XAI

PyTorch TensorFlow scikit-learn NumPy

Tools & Platforms

GitHub Actions PostgreSQL Jupyter PyPI


📈 GitHub Stats

  

GitHub Streak


🏆 GitHub Trophies

trophy


🐍 Contribution Snake

github contribution grid snake animation

📚 Research Profiles & Contact

Website Google Scholar ResearchGate ORCID LinkedIn X PyPI GEMEX


💬 Research Interests

🧠  Explainable AI (XAI) · Geodesic Manifold Methods · Riemannian Information Geometry
🏥  Clinical Decision Support · Drug Repositioning · Pediatric Oncology
🤖  Digital Twins · Deep Learning · GNN · GAN · Bi-LSTM
💊  Pharmacokinetics/Pharmacodynamics · ODE Modeling · Neural ODEs
🔐  Adversarial ML · CPS Security · LLM Safety & Hallucination
📡  Edge AI · Embedded Systems · Rehabilitation Robotics

"The goal of explainability is not just to explain a model — it is to make intelligence trustworthy."

⭐ If any of my projects help your work, a star means a lot!

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  1. gemex gemex Public

    GEMEX is a novel, model-agnostic Explainable AI (XAI) library grounded in Riemannian information geometry and differential geometry. It treats a trained model as defining a statistical manifold equ…

    Python 9 1