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| "source": [ | ||
| "def load_binary_from_s3(id, resolution='4'):\n", | ||
| " endpoint_url = 'https://uk1s3.embassy.ebi.ac.uk/'\n", | ||
| " endpoint_url = 'https://livingobjects.ebi.ac.uk/'\n", |
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As on a previous PR, this attempts to load 4007801.zarr from https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/4007801.zarr
But this image hasn't been migrated to livingobjects.
Instead you need to use:
https://livingobjects.ebi.ac.uk/idr/zarr/v0.4/idr0044A/4007801.zarr
So, either add the extra idr0044A to the line below,
root = 'idr/zarr/v0.4/idr0044/%s.zarr/%s/' % (id, resolution)\n",
or just update v0.4 here and add idr0044 where the function is called
load_binary_from_s3("idr0044/4007801", resolution)
| # Load-binary | ||
| def load_binary_from_s3(id, resolution='4'): | ||
| endpoint_url = 'https://uk1s3.embassy.ebi.ac.uk/' | ||
| endpoint_url = 'https://livingobjects.ebi.ac.uk/' |
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As elsewhere, need to use /v0.4/idr0044/%s.zarr/%s/ below and in idr0044_zarr_segmentation_parallel.py and idr0044_zarr_segmentation_parallel.ipynb
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Thanks, as @will-moore is appoving the docs build and mainly the changes in the S3 urls, I have also proven that the latest commits are fixing the micromamba build of the packages under See https://github.com/pwalczysko/omero-guide-python/actions/runs/24091078016/job/70277302556 The build is unfortunately disabled on this repo due to inactivity. Maybe @jburel or @joshmoore can help please, as I do not have perms to re-enable it https://github.com/ome/omero-guide-python/actions/workflows/build.yml |
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This is green now, should we merge @jburel ? Thanks |
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As per IDR/ome-ngff-samples#33
cc @will-moore @jburel